Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41510 751 / 0 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 697 / 0 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT1G75450 513 / 2e-178 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT5G56970 455 / 9e-156 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT5G21482 434 / 2e-147 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT4G29740 404 / 5e-136 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT2G19500 402 / 2e-135 ATCKX2, CKX2 cytokinin oxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G047900 [exp] 944 / 0 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.003G203600 [exp] 775 / 0 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 768 / 0 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.002G030500 [exp] 518 / 2e-180 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.005G232300 [exp] 516 / 1e-179 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G152500 [exp] 454 / 2e-155 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.006G221000 [exp] 430 / 4e-146 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.007G066100 [exp] 365 / 2e-120 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.001G462600 [exp] 47 / 4e-05 AT1G01980 658 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005317 [exp] 512 / 9e-180 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 508 / 5e-177 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10024289 [exp] 487 / 3e-168 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10016363 [exp] 481 / 7e-168 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10031046 [exp] 436 / 7e-150 AT2G41510 423 / 1e-144 cytokinin oxidase/dehydrogenase 1 (.1) Lus10035433 [exp] 430 / 2e-148 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1) Lus10018039 [exp] 429 / 4e-148 AT2G41510 435 / 5e-150 cytokinin oxidase/dehydrogenase 1 (.1) Lus10026471 [exp] 427 / 1e-144 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10003845 [exp] 387 / 1e-130 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10042035 [exp] 385 / 6e-130 AT2G41510 367 / 9e-123 cytokinin oxidase/dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF09265 [poplar] [flax] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Potri.016G044100.1 pacid=42810218 polypeptide=Potri.016G044100.1.p locus=Potri.016G044100 ID=Potri.016G044100.1.v4.1 annot-version=v4.1 ATGGGATCACCACCTTCGGCCTCTCTCAAACAGAACAACCTTATATTCCTTGTGTTTATCATGATCTTATTCTTTTGCTCCATACCTGATAAAGCCAACC TTTGTTCCAACCAATCTTCTGTCAACCCAAGTGGTGTTCCATACAAGAGCTCCTCCAACATCTCTTCATTGGAAACACTTCAGCTAGATGGCTACTTCAG CTTTGATCATATCGATTATGCAGCAAAGGACTTTGGCAATCGATATCATTTCCTACCATTAGCAGTTCTACATCCGAATTCGGTTTCTGATATTTCCAAC ACTATAAAGCATATTTTCAAAATGGGTTCCACTTCAAAGCTAACAGTTGCTGCTAGAGGCCACAGTCACTCGCTTCAAGGTCAAGCACAAGCTCATCAAG GTATAGTAATAAACATGGAATCCCTTCAGGGACCAGAGATGCAAATTCACACCGGAGAGCTGCCGTATGTGGATGCATCAGGTGGTGACTTGTGGATTAA TATTCTACATGAGACTCTTAAATACGGGCTTGCACCAAAATCTTGGACAGACTATCTTCATCTCACCGTTGGAGGTACCTTATCAAATGCCGGAATTAGT GGACAGGCATTCAAACATGGGCCACAAATTAACAACATTTACCAGTTGGAGGTTGTCACAGGCAAGGGAGAAGTAGTTACCTGTACAGAGAAGCAGAATG CAGAACTCTTTTATAGTGTTCTTGGAGGACTTGGGCAGTTTGGAATAATCACTCGAGCGAGAATCTCTCTTGAACCAGCACCAAAGATGGTGAAATGGAT CAGAGTACTATATGATGAATTCTCTAAATTTTCCAATGATCAAGAACGTTTAATATCATCCAAGGATTCTTTTGACTATATCGAAGGGCTTGTGATAATA AACAGAACCGGTCTCCTCAATAACTGGAGATCCTCCTTCAATCCAAAAGACCCGCTTCAGGCCAGTCGATTCACCTCAGAAGGAAAAACTCTTTACTGTC TAGAAATTGCTAAATACTTTAGCCCAGATGAGTCCGATATAATGAACCAGAAAACTGAGAGCCTATTGTCAGAACTGAGTTACATTTCATCCACACTCTT TCTGTCAGAAGTTTCTTACGTGGAATTCCTGGATAGAGTCCACCTGTCTGAAATCAAACTCCGGTCAAAAGGTTTATGGGAGATTCCTCACCCATGGATG AATCTTCTAATCCCTAGAACCAATATTATTGAATTTGCTCAAGAGGTCTTTGGCAATATTCTTACAGGCAATAGCAATGGTCCCATCCTCATCTATCCGG TCAACAAGTCCAAGTGGAACAATAGAACATCTTTAATCACCCCAGATGAAGAAACTTTCTACCAAGTGGCATTCTTATCCTCTGCAATGCCATCTTCCAC AGGAAGAGATGGCTTGTTTCACATTTTAGCCCAAAACCAAAGAATTCTAGATTTCTGTTCCAAAGCCGGTCTTGGAGCCAAGCAATATATGCCTCATTAC AGCACCCAGGAAGAATGGCAAGCTCATTTCGGCCCGCAATGGGAGGTTTTTGTAAAAAGGAAATCAACTTATGACCCATTGGCAATCCTAGCTCCTGGCC AAAGAATCTTCAGAAGGAAATAG
AA sequence Show only first row Show all	>Potri.016G044100.1 pacid=42810218 polypeptide=Potri.016G044100.1.p locus=Potri.016G044100 ID=Potri.016G044100.1.v4.1 annot-version=v4.1 MGSPPSASLKQNNLIFLVFIMILFFCSIPDKANLCSNQSSVNPSGVPYKSSSNISSLETLQLDGYFSFDHIDYAAKDFGNRYHFLPLAVLHPNSVSDISN TIKHIFKMGSTSKLTVAARGHSHSLQGQAQAHQGIVINMESLQGPEMQIHTGELPYVDASGGDLWINILHETLKYGLAPKSWTDYLHLTVGGTLSNAGIS GQAFKHGPQINNIYQLEVVTGKGEVVTCTEKQNAELFYSVLGGLGQFGIITRARISLEPAPKMVKWIRVLYDEFSKFSNDQERLISSKDSFDYIEGLVII NRTGLLNNWRSSFNPKDPLQASRFTSEGKTLYCLEIAKYFSPDESDIMNQKTESLLSELSYISSTLFLSEVSYVEFLDRVHLSEIKLRSKGLWEIPHPWM NLLIPRTNIIEFAQEVFGNILTGNSNGPILIYPVNKSKWNNRTSLITPDEETFYQVAFLSSAMPSSTGRDGLFHILAQNQRILDFCSKAGLGAKQYMPHY STQEEWQAHFGPQWEVFVKRKSTYDPLAILAPGQRIFRRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Potri.016G044100 [exp]	0	1
AT1G52140			unknown protein		Potri.003G049800 [exp]	6.16	0.7460
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Potri.009G121600 [exp]	13.78	0.7031
AT3G30390			Transmembrane amino acid trans...		Potri.004G111400 [exp]	16.97	0.6229
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Potri.005G232300 [exp]	21.35	0.6692
					Potri.010G167150 [exp]	33.52	0.4886
AT1G80580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G313500 [exp]	45.72	0.6300	ERF52
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.019G061800 [exp]	47.47	0.6235
					Potri.005G064250 [exp]	48.43	0.5937
AT1G73220		1-Oct, ATOCT1	organic cation/carnitine trans...		Potri.012G037400 [exp]	48.47	0.6498
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.010G154300 [exp]	52.91	0.6168

Compare expression of checked genes

Potri.016G044100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.