Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22355 203 / 3e-56 Cysteine/Histidine-rich C1 domain family protein (.1) AT4G11550 191 / 6e-52 Cysteine/Histidine-rich C1 domain family protein (.1) AT3G48400 185 / 5e-50 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40320 179 / 3e-48 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G42840 179 / 1e-47 Cysteine/Histidine-rich C1 domain family protein (.1.2) AT4G13992 177 / 3e-47 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G45730 175 / 6e-47 Cysteine/Histidine-rich C1 domain family protein (.1) AT3G27500 176 / 2e-46 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G59940 174 / 3e-46 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G37620 174 / 3e-46 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G044600 [exp] 1116 / 0 AT5G22355 260 / 7e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047200 [exp] 1112 / 0 AT5G22355 242 / 3e-70 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047300 [exp] 1084 / 0 AT5G22355 234 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044732 [exp] 1076 / 0 AT5G22355 261 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044800 [exp] 1023 / 0 AT5G22355 260 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047000 [exp] 1021 / 0 AT5G22355 237 / 1e-68 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G057800 [exp] 722 / 0 AT5G22355 273 / 4e-82 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044432 [exp] 566 / 0 AT5G45730 135 / 7e-35 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.019G020100 [exp] 132 / 9e-32 AT2G21840 239 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037470 [exp] 56 / 7e-08 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10017477 [exp] 54 / 2e-07 AT2G16050 340 / 4e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10003919 [exp] 52 / 4e-07 AT2G44380 179 / 2e-56 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [poplar] [flax] C1 PF03107 [poplar] [flax] C1_2 C1 domain
Representative CDS sequence Show only first row Show all	>Potri.016G044200.2 pacid=42809407 polypeptide=Potri.016G044266.1.p locus=Potri.016G044200 ID=Potri.016G044200.2.v4.1 annot-version=v4.1 ATGGAGGTTGAACATTTTAGCCACCCAGATCATCCATTGATCCTCATTAATCACGTTCTCGAGTATAGTTGTGAATTAGTTATTTGCTCTGGATGCGAGG GACCTATACGGGGTCCTTGCTACAGTTGCACCTCTTGCTACTTCTTTCTTCATAAGAAATGCGCCGAGCTGCCCCGTGAGATCAAGCGGCGCATTCATCG TAGACACCCTCTCCATCTACTGGCAAAGTCACCATATGAAGGAGAATACGGATGTGATCGGTGCGCCAAAATTTTCAATAGTTTTGTTTACCATTGTTCT TTCTGTAAGTTTGATCTTGATATCAAATGTGCTTTTCAACCGGGTTTTTTTGAGGTTGATAGTCAATTTCCCCACAAGGATCATCCATTGATTTTGAATG AAGAGAAAGAATATCATGGTGAAGGAGTTAAGTGCTCTGTTTGCAAGGAACCAATGTCGGGTCCTAGCTATAGTTGCACTTCTTGCAACTTCTTTCTTCA CAAGAAGTGTGCTGAGCTGCCCCCCGAGATCAATCGGCATTTGCATCCAGAACACCCTCTTCGTCTACTGCCAAATCATCACATGATCTGTGGTTTTTGC AAAGAAACTTGCTATGAGAGTTTTGTTTACTGCTGTTTTGTGTGCGAATTCAACCTCCATATCAAATGTGCTTTTCCACCTTGCGTTTATGCAGCTGATC AGGATCAGGGGCATCAATTTAGAAGCCTGATGAATCCACTTTCATTCAAATCAATCTCCTTCACTTGCCATGCATGTGGCACTGAGGGAGATGACTCCCC TTTCATGTGCACCATGTGCCAACTCTTGGTCCACGAAGAATGCATTTCATTGCCAGGCACCCTTAAAACGGCACTGCACCATCATCCCCGAATCATCCAC ACGTATCAACATCAACAATGCATCGAATCGATAAACAAGTACTGTGGAATTTGTCGTCGGGAAGTTGACTCAAAATACGGAGTTTACTGTTGCCCAGACT GTGACTTCGTTGCACACGTGAATTGTAGTAGAGAATATGGCGATTCTGCAACAGAGATTGTAGAAGAAAACGAAGAAGAGCAAAGTGTGACTGTTGATGA TCAATTCATGGAACCTAGCTTTCGCGCTGTCCGTGAGATCAGGCATGGAGATGAGAGAATAATTGAAGAGATCAAACATTTGAGTCATCAACATAACCTA GTCCTTTTTGACAAGGTTGATGATGATCTAAAGTGTGATGGGTGCATGTTACCAATCTCAACTCCGTTTTATAGTTGTGCCAGTTGTAATTTCTTTCTTG ACAAAACGTGCATAGAATTACCCAGGAAAAAAAAGTGGCAATATCACGAAAACCAACTGATTCTTTCATGGAGCCGAAGGGAACATTTTCGTGGGCTGAT CTGCTGTGATGTGTGTAATCAATATTTTCGTGGGCTCAGCTACTTTTGTGATATATGTCGTCTCTGCATTGATGTCCGATGCTTCAAATCATTGAAAGAT TCTTTTAAACATGGAGGTCATGAGCATCCCCTTTATCTTCCAGCGGACAGAAAGAATATTCTCCGTTGCAATATTGGAGGTCGCGGGCTCCCCCCTTGGG CTGCAGATGACAGAGAGAATATTCCCCATTGCAGTGGCTGTTGTGTCAGTGAAGAATCAAAGGTGTTTTTTAAATGTGTGGTTTGCGATTTCAAGCTGGG TATGAAATGTGCTACACTTCCATACAAAGCAAGACACGAGTATGATGAGCATCCTCTCTTCCTCACCTACATGAATGAAAATGACTACCAACCTTCCTGT ATAATTTGTGAAAAAGATAGAGACCCAAAGCTCTGGTTCTACCGTTGCGAGAATGCGACTTCGATGCTCATCCAGAGTGTGCTCTCGGGAAATACCCATA TGTCAAGCCAGGGGGGGTTCAACACGTATCCTAAACACCCTCACCCTCTTGTTTTGGTCGTCAAGACAGAGGATTATCGTCCACAGGCATGCGATACTTG TGGTGAGCCTTGCGACGACTTGGCCCTTGAATGTACTGATCCTAACTGCAGTTTTATCGTCCACAAGGAAAGACGGGCAATGCTATGA
AA sequence Show only first row Show all	>Potri.016G044200.2 pacid=42809407 polypeptide=Potri.016G044266.1.p locus=Potri.016G044200 ID=Potri.016G044200.2.v4.1 annot-version=v4.1 MEVEHFSHPDHPLILINHVLEYSCELVICSGCEGPIRGPCYSCTSCYFFLHKKCAELPREIKRRIHRRHPLHLLAKSPYEGEYGCDRCAKIFNSFVYHCS FCKFDLDIKCAFQPGFFEVDSQFPHKDHPLILNEEKEYHGEGVKCSVCKEPMSGPSYSCTSCNFFLHKKCAELPPEINRHLHPEHPLRLLPNHHMICGFC KETCYESFVYCCFVCEFNLHIKCAFPPCVYAADQDQGHQFRSLMNPLSFKSISFTCHACGTEGDDSPFMCTMCQLLVHEECISLPGTLKTALHHHPRIIH TYQHQQCIESINKYCGICRREVDSKYGVYCCPDCDFVAHVNCSREYGDSATEIVEENEEEQSVTVDDQFMEPSFRAVREIRHGDERIIEEIKHLSHQHNL VLFDKVDDDLKCDGCMLPISTPFYSCASCNFFLDKTCIELPRKKKWQYHENQLILSWSRREHFRGLICCDVCNQYFRGLSYFCDICRLCIDVRCFKSLKD SFKHGGHEHPLYLPADRKNILRCNIGGRGLPPWAADDRENIPHCSGCCVSEESKVFFKCVVCDFKLGMKCATLPYKARHEYDEHPLFLTYMNENDYQPSC IICEKDRDPKLWFYRCENATSMLIQSVLSGNTHMSSQGGFNTYPKHPHPLVLVVKTEDYRPQACDTCGEPCDDLALECTDPNCSFIVHKERRAML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044200 [exp]	0	1
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047200 [exp]	1.00	0.9456
AT5G17680			disease resistance protein (TI...		Potri.019G070300 [exp]	2.44	0.8852
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047300 [exp]	3.16	0.8591
AT5G17680			disease resistance protein (TI...		Potri.019G070479 [exp]	3.87	0.8811
AT5G07610			F-box family protein (.1)		Potri.005G043500 [exp]	6.00	0.8506
AT1G69550			disease resistance protein (TI...		Potri.004G088500 [exp]	6.00	0.8659
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Potri.002G106800 [exp]	10.81	0.8269
AT1G34320			Protein of unknown function (D...		Potri.001G305800 [exp]	11.61	0.8302
AT5G17680			disease resistance protein (TI...		Potri.019G069500 [exp]	14.14	0.8310
AT5G17680			disease resistance protein (TI...		Potri.005G031101 [exp]	15.42	0.8445

Compare expression of checked genes

Potri.016G044200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.