Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45730 134 / 9e-35 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G22355 132 / 8e-34 Cysteine/Histidine-rich C1 domain family protein (.1) AT1G55420 130 / 5e-33 EDA11 embryo sac development arrest 11, Cysteine/Histidine-rich C1 domain family protein (.1) AT3G11370 128 / 2e-32 Cysteine/Histidine-rich C1 domain family protein (.1) AT3G11385 127 / 1e-31 Cysteine/Histidine-rich C1 domain family protein (.1) AT3G46800 127 / 1e-31 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40320 124 / 4e-31 Cysteine/Histidine-rich C1 domain family protein (.1) AT3G07000 122 / 3e-30 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G37620 121 / 7e-30 Cysteine/Histidine-rich C1 domain family protein (.1) AT3G06990 119 / 2e-29 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G047300 [exp] 597 / 0 AT5G22355 234 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047000 [exp] 587 / 0 AT5G22355 237 / 1e-68 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044800 [exp] 581 / 0 AT5G22355 260 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044732 [exp] 575 / 0 AT5G22355 261 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044600 [exp] 573 / 0 AT5G22355 260 / 7e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047200 [exp] 565 / 0 AT5G22355 242 / 3e-70 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044200 [exp] 541 / 0 AT5G22355 203 / 3e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G057800 [exp] 411 / 7e-139 AT5G22355 273 / 4e-82 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229500 [exp] 79 / 4e-16 AT2G27660 171 / 5e-48 Cysteine/Histidine-rich C1 domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003919 [exp] 51 / 3e-07 AT2G44380 179 / 2e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10037470 [exp] 50 / 3e-06 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10016256 [exp] 47 / 1e-05 AT2G27660 107 / 8e-26 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10004165 [exp] 45 / 9e-05 AT2G27660 95 / 3e-21 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10017477 [exp] 42 / 0.0006 AT2G16050 340 / 4e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10021061 [exp] 42 / 0.0007 AT2G27660 98 / 3e-22 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [poplar] [flax] C1 PF03107 [poplar] [flax] C1_2 C1 domain
Representative CDS sequence Show only first row Show all	>Potri.016G044432.1 pacid=42809944 polypeptide=Potri.016G044432.1.p locus=Potri.016G044432 ID=Potri.016G044432.1.v4.1 annot-version=v4.1 ATGTGCCAAATCTTGGTCCACGAAAAATGCATTTCATTGCCACGCACCCTTAAAACGGTACTGCACCATCATCCCCATATCATCCACACCTATCATCCTC AACAATGTATCAAATCTATAAACAAGTACTGTGGAATTTGCCGTCGGGAAGTTGACACAGAATACGGAGTTTACTATTGCCCAGACTGTGACTTTGTTGC ACACGTGAATTGTAGCAGAGAATATGGCGATTCTGCAACAGAGATTGTAGAAGAAAACGAAGAAGAGCAAAGTGTGACTGCTGATGATCAATTCATGGAA CCTAGCTTTCGCGTTGTCCGTGAGATCAAGCATGGAGATGAGAGAATAATTGAAGAGATCGAACATTTCAGTCATCAACATAACCTAATCCTTATTGACA AGGTTGATGATGATCTAAAGTGTGATGGGTGCATGTTACCAATCTCCACTCCATTTTATAGTTGTGCCAGTTGTAATTTCTTTCTTGACAAAACCTGCAT AGAATTACCCAGGCGAAAAAAATGGCAATATCACGAAAACCAACTGATTCTTTCATGGAGCCGAGGGCCACATGATCTGTTCTACTGTGATGTGTGTAAG CAATATTTTCGTGGGCTCAGAAAGAGTATTCTCCGTTGCCGTATTGGAGTTCGCGGGCATCCCCCTTTGCTTGCAGATGACACAGAGATTATTCCCCATT GCGGTGGCTGTTGTGTCAGTGAAGAATCAAAGGTATTTTTTAAATGTGCGGTTTGCGATTTCAAGCTGGGTATGAAATGTGCTACACTGCCATACAAAGC AAGACACGAGTATGATGAGCATCCTCTCTTCCTCACCTACATGAATGAAAATGACTACCAACCTTCCTGTATAATTTGTGAAAAAGATAGAGACCCAAAG CTCTGGTTCTACCGTTGTGAGAAATGCGACTTCGATGCTCATCCAGAATGTGCTCTCGGGAAATACCCATACGTCAAGCGAGGGGGCGTTCACACGTATC CTAAACACCCTCACTCTATTGCTTTGGTCGACAAGACAGAGGATTATCCTGCATGCGATACTTGTGGTGAGCCTTGCGATGACTTGGCCCTTGAATGTAC TGATCCTAACTGCGATTTTATCGTCCACAGGAAAAGATTGCAATGCTTTATGTCATTATGGTAA
AA sequence Show only first row Show all	>Potri.016G044432.1 pacid=42809944 polypeptide=Potri.016G044432.1.p locus=Potri.016G044432 ID=Potri.016G044432.1.v4.1 annot-version=v4.1 MCQILVHEKCISLPRTLKTVLHHHPHIIHTYHPQQCIKSINKYCGICRREVDTEYGVYYCPDCDFVAHVNCSREYGDSATEIVEENEEEQSVTADDQFME PSFRVVREIKHGDERIIEEIEHFSHQHNLILIDKVDDDLKCDGCMLPISTPFYSCASCNFFLDKTCIELPRRKKWQYHENQLILSWSRGPHDLFYCDVCK QYFRGLRKSILRCRIGVRGHPPLLADDTEIIPHCGGCCVSEESKVFFKCAVCDFKLGMKCATLPYKARHEYDEHPLFLTYMNENDYQPSCIICEKDRDPK LWFYRCEKCDFDAHPECALGKYPYVKRGGVHTYPKHPHSIALVDKTEDYPACDTCGEPCDDLALECTDPNCDFIVHRKRLQCFMSLW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45730			Cysteine/Histidine-rich C1 dom...		Potri.016G044432 [exp]	0	1
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047000 [exp]	1.73	0.9248
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044732 [exp]	2.00	0.9034
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044800 [exp]	6.00	0.8878
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.004G061500 [exp]	8.30	0.7442
AT4G37180	GARP		Homeodomain-like superfamily p...		Potri.007G039400 [exp]	15.49	0.7751
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.011G165700 [exp]	16.12	0.8123
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Potri.005G020800 [exp]	18.00	0.7049	SYP41.1
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Potri.017G021330 [exp]	28.77	0.7786
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134100 [exp]	30.59	0.7689
AT4G27190			NB-ARC domain-containing disea...		Potri.001G444000 [exp]	32.68	0.7949

Compare expression of checked genes

Potri.016G044432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.