Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06740 702 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 356 / 3e-114 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 348 / 1e-110 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 346 / 7e-110 RLK receptor lectin kinase (.1) AT3G53810 338 / 4e-107 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 336 / 5e-106 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 333 / 4e-105 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60280 332 / 7e-105 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60320 325 / 7e-102 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 323 / 5e-101 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G193000 [exp] 1048 / 0 AT5G06740 688 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G455500 [exp] 442 / 5e-147 AT5G06740 416 / 1e-136 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G209300 [exp] 427 / 1e-140 AT5G06740 368 / 3e-118 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G146500 [exp] 424 / 4e-140 AT5G06740 411 / 5e-135 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 381 / 5e-123 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 375 / 7e-121 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.018G028800 [exp] 367 / 9e-118 AT5G06740 371 / 1e-119 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 357 / 2e-114 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 354 / 5e-114 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004166 [exp] 726 / 0 AT5G06740 682 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10021060 [exp] 717 / 0 AT5G06740 667 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016257 [exp] 622 / 0 AT5G06740 638 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10036986 [exp] 483 / 6e-165 AT5G06740 456 / 8e-155 Concanavalin A-like lectin protein kinase family protein (.1) Lus10009423 [exp] 441 / 3e-145 AT5G06740 446 / 2e-147 Concanavalin A-like lectin protein kinase family protein (.1) Lus10028699 [exp] 439 / 3e-145 AT5G06740 455 / 1e-151 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 397 / 2e-129 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 385 / 3e-124 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 387 / 2e-123 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 370 / 1e-118 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.016G045000.1 pacid=42809987 polypeptide=Potri.016G045000.1.p locus=Potri.016G045000 ID=Potri.016G045000.1.v4.1 annot-version=v4.1 ATGCGCTTTCCCTTGGTAGCCACATCCGTAATTCTAGCTGTCCTCTGGGCTCTTGCTCTAGTACAGAGCCTTGATTTTCAGTTTCCAAACTTCACGGAAT CAGATAGAGATCAACTTATTTTGACTCCCGATATTTCTTATATAGCCCATACCGCCATCCAAGTCACACCAGATTCTAATGGATTTTCTATGGTTAACAG GGCTGGAAGGGTCTTGTACAGATGGCCATTCAGACTATGGAGCAACGGAGGGAAGAATGCATCTTTCAATACAACCTTCGTACTCAATATCAAAAGACAG ACAGCTTCAAGTGGTGAAGGCTTAGCTTTTATATTAACAGCAGATCGTGATGTTCCAGATGGAAGTAAAGGACAATGGCTTGGAATAGTAAATTCCACGT TAAATGGATCCAAGGAAGCCAGGACAGTGGCAGTAGAATTTGACACCGGACAAAGTTTCCCGGATGATCTTGATGATAACCATATTGGATTGGATGTGAA CAGTGTCTACTCAAGAACATCGGTTTCGTTAAATGACAGAGGCATTTATCTTTCTAAGGGCAAAGATGTCACGGTAGATGTTCGATACGACGGCAAGAAT TTGACTGTTTTTGTGGATAAGGACATGAAGAATCCAGTTATTTCTGAGCATCTCAATCTCTCAGACTATCTTCCAGAAAACGTTTATGTGGGGTTTTCGG GTTCAACAAGTAACAACACTCAACTAAATTGTGTGAGGTCATGGGAGTTCATCGGTTCGGAGATAAAAGACTCCAAGTTGCGGTGGGTTTGGATTTTAGT TGCGGTAGGATCAGTACTAATCCTGTTGATTAGTATTGGTATCGCCCTTTTCTTGTACAGGAAAAGAGGATGTCAAGTGGACAGGCTGGAGGATGCTTAT CCAAATATTGATGAGGCAATCCTAGGCTCCTCAACTGCTCCGAGGAAATACAAATTCAAAGAACTTAGCAAAGCAACTGGTAATTTCAACCCCAAGAACA AGCTCGGGAAAGGTGGCTTCGGGACAGTCTACAAGGGAATCTTGGGAAACAAGGAAGTCGCTGTCAAAAGAATCTCAAAGAAATCAACCCAAGGTAAACA AGAATTCATAGCAGAAGTCACTACAATAGGCAACCTCCATCACCGAAATCTTGTTAGGTTGATCGGATGGTGTCATGAAAGGCGTGAGTACCTCTTGGTT TACGAGTACTTGCCTAATGGAAGCCTGGATAAATATGTATTTTGTGATGAAAAGCCAGGCACGCAGGAAGCAACCCTGAGCTGGGAAAAAAGGCTGAGCG TGATTTCCGGAGTGGCACAGGCATTGGATTATCTGCATAATGGCTGCATGAAGAGGGTACTTCACCGAGACATAAAGGCCAGTAACATAATGTTGGATTT AGATTTCAAAGCGCAACTGGGAGATTTTGGCTTAGCTCGCACCATTATTCGAAATGAACAAACTCACCACACAACGAAAGAGCTTGCTGGAACACCTGGC TACATGGCTCCGGAGAGTATTCTTACGGGAAGGGCAACGACCGAAACAGATGTTTATGCTTTTGGCGTTCTTGTTCTGGAAGTTGCTTGTGGAAGGAAGC CTGGAGGGCAGACTGAGCGGGATGACTACATTAGTAACATTGTGCATGGGCTATGGGAACTTTACAGAAGGGGAACGATCCTCGAAGGTGCAGACCCCAG ATTGGATGGAATATTCAAAAATGAAGAAATGGAGTGCGTGCTTATTCTGGGGTTGGCCTGCTGCCATCCAAATCCAAACGATAGGCCCTCCATGAAAACT GTTTTGCAGGTCCTTACAGGGGAAGCGCCACCACCAGACGTGCCTGCTGAAAGGCCTGTTTTTATGTGGCCGCCCAAGCCTCCATCCTTCAAAGAATGGG GCAACTCTATCATTGGAGGCGAACTCTCTCCATTTTCAGAAATCTCAGGGAGATGA
AA sequence Show only first row Show all	>Potri.016G045000.1 pacid=42809987 polypeptide=Potri.016G045000.1.p locus=Potri.016G045000 ID=Potri.016G045000.1.v4.1 annot-version=v4.1 MRFPLVATSVILAVLWALALVQSLDFQFPNFTESDRDQLILTPDISYIAHTAIQVTPDSNGFSMVNRAGRVLYRWPFRLWSNGGKNASFNTTFVLNIKRQ TASSGEGLAFILTADRDVPDGSKGQWLGIVNSTLNGSKEARTVAVEFDTGQSFPDDLDDNHIGLDVNSVYSRTSVSLNDRGIYLSKGKDVTVDVRYDGKN LTVFVDKDMKNPVISEHLNLSDYLPENVYVGFSGSTSNNTQLNCVRSWEFIGSEIKDSKLRWVWILVAVGSVLILLISIGIALFLYRKRGCQVDRLEDAY PNIDEAILGSSTAPRKYKFKELSKATGNFNPKNKLGKGGFGTVYKGILGNKEVAVKRISKKSTQGKQEFIAEVTTIGNLHHRNLVRLIGWCHERREYLLV YEYLPNGSLDKYVFCDEKPGTQEATLSWEKRLSVISGVAQALDYLHNGCMKRVLHRDIKASNIMLDLDFKAQLGDFGLARTIIRNEQTHHTTKELAGTPG YMAPESILTGRATTETDVYAFGVLVLEVACGRKPGGQTERDDYISNIVHGLWELYRRGTILEGADPRLDGIFKNEEMECVLILGLACCHPNPNDRPSMKT VLQVLTGEAPPPDVPAERPVFMWPPKPPSFKEWGNSIIGGELSPFSEISGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06740			Concanavalin A-like lectin pro...		Potri.016G045000 [exp]	0	1
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.003G195900 [exp]	2.23	0.9997	NQR.1
					Potri.001G439900 [exp]	3.46	0.9997
AT2G15220			Plant basic secretory protein ...		Potri.009G094500 [exp]	5.65	0.9997
					Potri.010G218500 [exp]	6.16	0.9986
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G221600 [exp]	7.07	0.9977
					Potri.003G010499 [exp]	10.00	0.9996
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.001G335900 [exp]	10.95	0.9996
AT5G11210		ATGLR2.5	ARABIDOPSIS THALIANA GLU, glut...		Potri.001G375133 [exp]	10.95	0.9994
					Potri.015G034166 [exp]	11.40	0.9992
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G375100 [exp]	11.74	0.9993

Compare expression of checked genes

Potri.016G045000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.