Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12100 535 / 0 Cation efflux family protein (.1.2) AT2G04620 69 / 2e-12 Cation efflux family protein (.1) AT3G58810 48 / 9e-06 ATMTPA2, MTP3, MTPA2, ATMTP3 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) AT2G29410 45 / 8e-05 ATMTPB1, MTPB1 metal tolerance protein B1 (.1) AT2G46800 43 / 0.0004 ATMTP1, ZAT1, ZAT, ATCDF1 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110300 [exp] 65 / 3e-11 AT2G04620 483 / 2e-158 Cation efflux family protein (.1) Potri.002G180100 [exp] 49 / 2e-06 AT2G46800 502 / 3e-178 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.001G450900 [exp] 45 / 6e-05 AT2G46800 285 / 3e-92 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.014G106200 [exp] 45 / 7e-05 AT2G46800 277 / 4e-90 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.011G150600 [exp] 42 / 0.0006 AT3G58810 281 / 2e-91 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004168 [exp] 536 / 0 AT3G12100 511 / 0.0 Cation efflux family protein (.1.2) Lus10021058 [exp] 504 / 1e-179 AT3G12100 461 / 1e-162 Cation efflux family protein (.1.2) Lus10004102 [exp] 62 / 3e-10 AT2G04620 784 / 0.0 Cation efflux family protein (.1) Lus10013358 [exp] 61 / 9e-10 AT2G04620 783 / 0.0 Cation efflux family protein (.1) Lus10012604 [exp] 44 / 0.0001 AT3G61940 500 / 2e-177 Cation efflux family protein (.1) Lus10002674 [exp] 44 / 0.0001 AT3G58810 503 / 5e-179 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [poplar] [flax] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Potri.016G045200.1 pacid=42809862 polypeptide=Potri.016G045200.1.p locus=Potri.016G045200 ID=Potri.016G045200.1.v4.1 annot-version=v4.1 ATGGAGACGCCCAGAAATCCAGATGATGTTGATTTTGGATTGGGTACAAGCGATCGCAGGTACGCTTATTGGCGCCAATCTTCATTTCACCAACAATCAC AAGAACCCAAAACCCCAATTTCTATCATCACGAATGATGCAACAAAGCCTCTGCTTTCACGCACCGTTTCAAGCATTGACATTCCACCGGAGATTGATTA TTCTTTTGATTACCAAAACGACACCATTTTTGAGGACCCAAAGAGGAAACTATCGGATTTGGATTCCGTGCTTTCGATTTTTAGGGTTATTAGGTCTGGG AGTAGACAAATGAGAAGACTTTTCTTGATGATTTCGCTTAATGTTGCGTATTCTACTGCTGAATTGGCGATCGGACTCTTTACAGGCCGTGTCGGTTTGG TATCTGATGCGTTTCATTTGACATTTGGATGTGGGCTTTTAACGTTTTCGTTGTTTGCCATGGCTGCTTCTAGGAGAAAGTCTGATCATGTCTACACTTA TGGGTACAAAAGGCTTGAAGTGTTGGCTGCTTTTACTAATGCTCTGTTTCTTTTGTTCATGTCATTCTCGTTAGCTGTGGAAGCACTCCATGCATTCATA CAAGATGAATCTGAACACAAGCATTACTTGATTGTTTCTGCGGTGACAAATTTATTGGTGAATCTTATTGGTGTTTGGTTCTTCAGGAATTATGCTCGCA TTAATATTGTCTACAGAAAAGCAGAAGATATGAATTTCCATTCAGTATGCTTGCATGTTATTGCAGATTCAATTCGCAGTGCAGGCTTGATATTGGCATC CTGGTTTTTGTCCCTTGGGGTTGAAAATGCTGAAGTTTTATGTTTGGGGCTGGTTTCTGCTGCTGTTGTTATGCTTGTCCTACCACTATTTAAAGCCACG GGTGGCATCTTGCTTCAAATGGCACCACCTAGCATTCCATCTTCAGCATTGAGCAAATGCTTGAGACAGGTTTCTGCCCGTGAAGATGTTGCTGAAGTTT CTGAAGCTCGGTTTTGGGAATTGGTGCCTGGTCATGTTATTGGCTCAATTTCACTTCAGGTGAAGGAGGGGGTGGACGACCGCCCAATATTACAATGGGT GCATGGTTTGTACCATGATCTGGGAGTACAGGATCTGACAGTGCAAACCAATTATGATTGA
AA sequence Show only first row Show all	>Potri.016G045200.1 pacid=42809862 polypeptide=Potri.016G045200.1.p locus=Potri.016G045200 ID=Potri.016G045200.1.v4.1 annot-version=v4.1 METPRNPDDVDFGLGTSDRRYAYWRQSSFHQQSQEPKTPISIITNDATKPLLSRTVSSIDIPPEIDYSFDYQNDTIFEDPKRKLSDLDSVLSIFRVIRSG SRQMRRLFLMISLNVAYSTAELAIGLFTGRVGLVSDAFHLTFGCGLLTFSLFAMAASRRKSDHVYTYGYKRLEVLAAFTNALFLLFMSFSLAVEALHAFI QDESEHKHYLIVSAVTNLLVNLIGVWFFRNYARINIVYRKAEDMNFHSVCLHVIADSIRSAGLILASWFLSLGVENAEVLCLGLVSAAVVMLVLPLFKAT GGILLQMAPPSIPSSALSKCLRQVSAREDVAEVSEARFWELVPGHVIGSISLQVKEGVDDRPILQWVHGLYHDLGVQDLTVQTNYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12100			Cation efflux family protein (...		Potri.016G045200 [exp]	0	1
AT1G05270			TraB family protein (.1)		Potri.017G038500 [exp]	2.64	0.6845
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Potri.006G082500 [exp]	5.47	0.6707
AT5G16940			carbon-sulfur lyases (.1.2)		Potri.017G132500 [exp]	8.12	0.6153
AT3G21280		UBP7	ubiquitin-specific protease 7 ...		Potri.003G033700 [exp]	18.38	0.6768	UBP6.1
AT2G05590			TLD-domain containing nucleola...		Potri.010G065900 [exp]	43.68	0.5502
AT4G36750			Quinone reductase family prote...		Potri.007G029600 [exp]	46.47	0.6359
AT5G57580			Calmodulin-binding protein (.1...		Potri.005G020200 [exp]	47.83	0.6117	CBP60.7
AT2G16460			Protein of unknown function (D...		Potri.007G016300 [exp]	48.37	0.5883
AT5G22950		VPS24.1	SNF7 family protein (.1)		Potri.008G034700 [exp]	62.04	0.5872
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Potri.002G157500 [exp]	91.26	0.5692

Compare expression of checked genes

Potri.016G045200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.