Plant FIBer expression Database

Potri.016G045300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42070 353 / 3e-123 ATNUDX23, ATNUDT23 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1)
AT5G20070 46 / 2e-05 ATNUDX19, ATNUDT19 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1)
AT1G68760 42 / 0.0001 ATNUDX1, ATNUDT1 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G192800
[exp]
480 / 5e-173 AT2G42070 351 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1)
Potri.006G154200
[exp]
48 / 4e-06 AT5G20070 590 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1)
Potri.018G070400
[exp]
48 / 5e-06 AT5G20070 609 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029289
[exp]
386 / 3e-136 AT2G42070 355 / 5e-124 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1)
Lus10016257
[exp]
51 / 7e-07 AT5G06740 638 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Lus10014493
[exp]
48 / 6e-06 AT5G20070 590 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1)
Lus10030056
[exp]
47 / 1e-05 AT5G20070 594 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0261 NUDIX PF00293 NUDIX NUDIX domain
CL0167 Zn_Beta_Ribbon PF14803 Nudix_N_2 Nudix N-terminal
Representative CDS sequence
>Potri.016G045300.1 pacid=42810396 polypeptide=Potri.016G045300.1.p locus=Potri.016G045300 ID=Potri.016G045300.1.v4.1 annot-version=v4.1
ATGCTAAAAGCAATACAGAATCTTGGTTCTGTGGCTTATTATTATAGACTGAAACCACCACATGCCGCTAAAACTAATGCTTTTGTCTCAACCTCCGCCA
AACCATTATCCTGTTCTTCTCCAATAACCAGACCCACAAATCCTTTCATGTTTTTGACTCGAAAGACTCGGTCTTTGGGACCTGTTCGTGCTCACTCAAC
TCCGTCTGAGTCTAAGATGGATGGAACCTCTTCTTCATCTGTTGCTGTTCAGTCATCTGGAAGTGCTCGCAAGATCAATTTCTGTCAGTGGTGTGGTGGC
CAGACAAAACATGATATACCTGATGGCGAGGAAAAGATGAGAGCCATTTGCACACTTTGTGAGAAAATTTCCTATCAAAACCCTAAAATGGTGGTGGGAT
GCCTCATTGAGCATGATAACAAGGTCCTACTCTGCAAGCGAAACATCCAACCATCACATGGCCTCTGGACCCTTCCAGCTGGTTACCTGGAAATTGGTGA
GTCTGCTGCAGAAGGGGCAATCAGGGAAACCTGGGAGGAAGCACGTGCAGAAGTGGAAGTCGTGTCACCTTTTGCTCAATTGGACATCCCTCGTATTGGC
CAAACTTACATAATTTTCTTGGCAAAGTTGAAGAAGCCCCACTTTTCACCTGGTCCAGAGTCATTGGAGTGCCGACTTTTTTCAATTGATGATTTACCTT
TGGATTCCTTGGCATTTTCATCAATGGTGGTTACTTTAAAGTTGTACATTGAAGATGTTAAAGCTGGAAGCCGAAAATTTCACTATGGCACGATTAACAA
GAGGCCTGGCTCGAGCCCTTCTGATACCCATGCCTATACACTTGATCATCATTTGCAGTCCTGA
AA sequence
>Potri.016G045300.1 pacid=42810396 polypeptide=Potri.016G045300.1.p locus=Potri.016G045300 ID=Potri.016G045300.1.v4.1 annot-version=v4.1
MLKAIQNLGSVAYYYRLKPPHAAKTNAFVSTSAKPLSCSSPITRPTNPFMFLTRKTRSLGPVRAHSTPSESKMDGTSSSSVAVQSSGSARKINFCQWCGG
QTKHDIPDGEEKMRAICTLCEKISYQNPKMVVGCLIEHDNKVLLCKRNIQPSHGLWTLPAGYLEIGESAAEGAIRETWEEARAEVEVVSPFAQLDIPRIG
QTYIIFLAKLKKPHFSPGPESLECRLFSIDDLPLDSLAFSSMVVTLKLYIEDVKAGSRKFHYGTINKRPGSSPSDTHAYTLDHHLQS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G42070 ATNUDX23, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Potri.016G045300
[exp]
0 1
AT3G11470 4'-phosphopantetheinyl transfe... Potri.006G211300
[exp]
11.61 0.8010
AT1G53400 Ubiquitin domain-containing pr... Potri.001G387400
[exp]
14.49 0.7899
AT1G08370 DCP1, ATDCP1 decapping 1 (.1) Potri.009G160200
[exp]
15.62 0.7884
Potri.003G152500
[exp]
25.49 0.7883
AT1G80940 unknown protein Potri.003G184925
[exp]
29.25 0.7090
AT1G17745 PGDH D-3-phosphoglycerate dehydroge... Potri.010G249600
[exp]
40.38 0.7856
AT3G25120 Mitochondrial import inner mem... Potri.002G246000
[exp]
61.33 0.6865
AT3G05010 Protein of unknown function, t... Potri.005G044700
[exp]
64.99 0.7455
AT5G20120 unknown protein Potri.018G066700
[exp]
88.04 0.7034
AT1G67570 Protein of unknown function (D... Potri.008G178100
[exp]
88.38 0.7460

Potri.016G045300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.