Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06750 578 / 0 Protein phosphatase 2C family protein (.1.2.3) AT5G66080 421 / 7e-147 Protein phosphatase 2C family protein (.1) AT3G51370 421 / 9e-147 Protein phosphatase 2C family protein (.1.2) AT3G12620 412 / 3e-143 Protein phosphatase 2C family protein (.1.2) AT3G55050 400 / 1e-138 Protein phosphatase 2C family protein (.1.2) AT4G38520 398 / 1e-137 Protein phosphatase 2C family protein (.1.2) AT4G33920 395 / 2e-136 Protein phosphatase 2C family protein (.1) AT3G17090 387 / 3e-133 Protein phosphatase 2C family protein (.1.2) AT5G02760 357 / 1e-121 Protein phosphatase 2C family protein (.1) AT3G16560 135 / 3e-35 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G192600 [exp] 717 / 0 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.005G108500 [exp] 423 / 2e-147 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 419 / 2e-145 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 418 / 2e-145 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 415 / 5e-144 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G297200 [exp] 412 / 4e-143 AT4G33920 563 / 0.0 Protein phosphatase 2C family protein (.1) Potri.009G091600 [exp] 404 / 4e-140 AT4G33920 561 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G214700 [exp] 400 / 2e-138 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 387 / 2e-133 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004170 [exp] 582 / 0 AT5G06750 518 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10021056 [exp] 581 / 0 AT5G06750 515 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10041861 [exp] 416 / 2e-144 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10011521 [exp] 405 / 2e-140 AT4G33920 483 / 2e-171 Protein phosphatase 2C family protein (.1) Lus10023470 [exp] 404 / 8e-140 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 403 / 2e-139 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10019302 [exp] 398 / 1e-137 AT4G33920 472 / 4e-167 Protein phosphatase 2C family protein (.1) Lus10030302 [exp] 398 / 2e-137 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10019893 [exp] 397 / 2e-137 AT3G12620 470 / 2e-166 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 398 / 3e-137 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.016G045600.1 pacid=42810674 polypeptide=Potri.016G045600.1.p locus=Potri.016G045600 ID=Potri.016G045600.1.v4.1 annot-version=v4.1 ATGTTGTCGTGGCTAAAAAGGATAGCAATGGCTTGTTGGAGACCGGTGAGGCGATATGCACGTATGAGCAAGGATGAAATTTTAAATGATGATGATGATT CTGCTACTCCTGACTCTCTTTTATGGTCTAGAGACCTTGAGAAACACTCTTTTGGAGAGTTCTCTTTTGCTGTGGTTCAAGCCAACGAGGTTATTGAAGA TCATAGTCAAGTAGAGACTGGTCGTGATGCTACTTTTATTGGTGTTTATGATGGGCATGGTGGACCTGATGCTTCTCGGTTCATATCTGACCATTTGTTC TTAAATCTCATGAGGCACGCTAGAGAAAGAGGAACCATCTCTGAAGATATCCTTAGAAGTGCCTTCTCTGCAACTGAGGATGGGTTTCTTGCTCTTGTCC GTAGGTCATGTGGAATAAAACCATTGATTGCAGCAGTTGGATCTTGTTGTTTGGTTGGAGTTATCTGGAGGGGGATGCTATATGTTGCTAATCTCGGTGA TTCTCGAGCTGTAATTGGTTCTCTAGGTAGGTCAAGTAAGGTAGTTGCTGAGCAGTTGACCAGGGATCATAATGCTAGTATGGAAGAGGTTAGACAAGAA CTCAAGTCCTTGCATCCAGATGATTCACATATTGTTGTTATGAAGCGTGGAGTATGGCGTATCAAAGGCATCATTCAGGTTTCTAGATCTATAGGTGATG CATACTTGAAGCGGCCCGAGTTTTCTCTTGATCCTTCTTTTCCACGATTTCACCTCCCTGAACCCATTCGCCGGCCCGTGCTAACATCAGAACCATCCAT GTATACAAGGGTTTTAGGACCCAATGATAAATTTGTCATATTTGCATCTGATGGGCTGTGGGAACAACTAACAAACCAGGAGGCAGTTGAGATTGTGTGC AATAATCCACGAGCTGGAATTGCTAGGAAACTAGTCAAAACAGCTCTAAATGTGGCAGCTAGGAAGAGGGAGATGAGGTATGATGATCTTAAGAAGGTCG ATAGGGGGATCAGGCGTTTTTTTCATGATGATACGACAGTAGTTGTGATCTTTATAGACCATGAGTTGCTAGGGAATAGTACATCAGCACCAGAGATGTC AGTACGAGGGTTTAACGACACTGTTGGACCATCAAATTTTAACATTCTTCAAGGAATTGATGCGAATGCCCGGTCCACTATATAA
AA sequence Show only first row Show all	>Potri.016G045600.1 pacid=42810674 polypeptide=Potri.016G045600.1.p locus=Potri.016G045600 ID=Potri.016G045600.1.v4.1 annot-version=v4.1 MLSWLKRIAMACWRPVRRYARMSKDEILNDDDDSATPDSLLWSRDLEKHSFGEFSFAVVQANEVIEDHSQVETGRDATFIGVYDGHGGPDASRFISDHLF LNLMRHARERGTISEDILRSAFSATEDGFLALVRRSCGIKPLIAAVGSCCLVGVIWRGMLYVANLGDSRAVIGSLGRSSKVVAEQLTRDHNASMEEVRQE LKSLHPDDSHIVVMKRGVWRIKGIIQVSRSIGDAYLKRPEFSLDPSFPRFHLPEPIRRPVLTSEPSMYTRVLGPNDKFVIFASDGLWEQLTNQEAVEIVC NNPRAGIARKLVKTALNVAARKREMRYDDLKKVDRGIRRFFHDDTTVVVIFIDHELLGNSTSAPEMSVRGFNDTVGPSNFNILQGIDANARSTI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06750			Protein phosphatase 2C family ...		Potri.016G045600 [exp]	0	1
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Potri.009G168200 [exp]	2.82	0.7060
AT1G34270			Exostosin family protein (.1)		Potri.013G116200 [exp]	6.63	0.7099
AT5G46630			Clathrin adaptor complexes med...		Potri.001G143800 [exp]	13.03	0.6605
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Potri.015G044400 [exp]	15.23	0.6683
AT5G13390		NEF1	no exine formation 1 (.1)		Potri.003G161400 [exp]	16.97	0.6189	Pt-NEF1.1
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Potri.013G008400 [exp]	18.49	0.6828
AT1G08800			Protein of unknown function, D...		Potri.005G220600 [exp]	18.73	0.6298
AT3G15040			Protein of unknown function, D...		Potri.016G076300 [exp]	20.12	0.5950
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.009G018500 [exp]	21.67	0.6754
AT5G10830			S-adenosyl-L-methionine-depend...		Potri.005G067500 [exp]	29.73	0.6825

Compare expression of checked genes

Potri.016G045600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.