Plant FIBer expression Database

Potri.016G045800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42120 724 / 0 POLD2 DNA polymerase delta small subunit (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G192400
[exp]
810 / 0 AT2G42120 705 / 0.0 DNA polymerase delta small subunit (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016262
[exp]
696 / 0 AT2G42120 672 / 0.0 DNA polymerase delta small subunit (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF04042 DNA_pol_E_B DNA polymerase alpha/epsilon subunit B
Representative CDS sequence
>Potri.016G045800.5 pacid=42808914 polypeptide=Potri.016G045800.5.p locus=Potri.016G045800 ID=Potri.016G045800.5.v4.1 annot-version=v4.1
ATGGCTGCAATGGAAATCGACACAGAGAAAAATCTTCAGAGAAAGCAATCCACTTACCAATCCCTGGATGAGACATTTGAGATTCAAAATGAGACATACA
GAGGTCAGCAATACAGTCAAATATACTTTGCTCGTCTTCACACGATGAGGACTCTGCTTTACTCTCTTGTTACCCATTGGAAACCCCATGTCCCTGTTTG
TACAGTTTTGGAATTGGAAGAAGGCAAGGAATGCATCATTGTTGGAACCCTGTACAAGCACATGAAACTTAAACCTTGCATTCTTGATGAATACTCGAAG
GAGAGATCTGCATTGCCTCTTGTCAAGCCTCATAACTTCATGCATCCAGATGATCATTTGGTTTTGGAAGATGAAAGTGGAAGAGTTAAGCTTGGTGGCA
CCGTGCTTTCACCTTCAGTATATGTCACAGGTGTAGTTGTCGCTTTGCATGGAAAGGAAACTGGTGCTGGTGACTTTATGGTGCTAGATGTCCTTGAAGC
TGGTTTAGCACCACAGATAGAACCCCAACTTAAATCAAGAGAGGATAAGTATGTTGTTTTTATTTCTGGGGTGAATGCTGGGAGCAGCTTATCAAACCCT
CTCCAATTTCAGCTTCTTGTGGATCATATAACAGGACATTTGGGAGATGAAAAGGAACAGGGTATTGCAGCAGAGATAGTTCATGTTGTGATTGCAGGTA
ATTCCGTGGAAATTCCCCTTGGTCTTCTAAATGGACAGAATTTGGCTTCAAAGGATCAGTCTAGGCTCTCTGAGCCAGTTCAAGAGCTGGATATTTTGTT
GACTCAGATTGCTGCAGGTGTGCCTGTGGATATCATGCCAGGATCCAATGATCCAGCGAACTTTTGTTTACCTCAACAGCCATTGAACAGATGGCTTTTC
CCTGGATCCAGAGCTTATAACACTTTTAGGTCGTGTACTAATCCTCATTGTTTTGAGCTTGCTGGTGTCAGGATTCTTGGAACGTCAGGTCAGAACATTG
ATGATCTTAAAAAATATTCGGAGGGAAAGGATGAGCTTGAATTTATGGAAAGGACGTTAAAGTGGAGGCATCTGGCACCAACAACACCTAACACACTCGG
ATGTTATCCTTTCACTGATAGGGATCCTTTCCTGATTGAGAGCTGTCCTCATGTTTACTTTGTTGGAAACCAAGATAAATATGGAACTCGCATTTTAAAG
GGTTCAGAAGGGCAGTTGGTGAGACTTATTTCCATTCCTAAATTCTGTAATACTGGAATGGTGGTTGTGCTTAACCTGAGAAATCTCGAATGCCACACTC
TTAGCTTTGGAACTCAATTCAGCTTATAA
AA sequence
>Potri.016G045800.5 pacid=42808914 polypeptide=Potri.016G045800.5.p locus=Potri.016G045800 ID=Potri.016G045800.5.v4.1 annot-version=v4.1
MAAMEIDTEKNLQRKQSTYQSLDETFEIQNETYRGQQYSQIYFARLHTMRTLLYSLVTHWKPHVPVCTVLELEEGKECIIVGTLYKHMKLKPCILDEYSK
ERSALPLVKPHNFMHPDDHLVLEDESGRVKLGGTVLSPSVYVTGVVVALHGKETGAGDFMVLDVLEAGLAPQIEPQLKSREDKYVVFISGVNAGSSLSNP
LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSVEIPLGLLNGQNLASKDQSRLSEPVQELDILLTQIAAGVPVDIMPGSNDPANFCLPQQPLNRWLF
PGSRAYNTFRSCTNPHCFELAGVRILGTSGQNIDDLKKYSEGKDELEFMERTLKWRHLAPTTPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKYGTRILK
GSEGQLVRLISIPKFCNTGMVVVLNLRNLECHTLSFGTQFSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G42120 POLD2 DNA polymerase delta small sub... Potri.016G045800
[exp]
0 1
AT1G80670 RAE1 RNA export factor 1, Transduci... Potri.001G048100
[exp]
1.73 0.8430
AT4G08850 Leucine-rich repeat receptor-l... Potri.013G036600
[exp]
4.35 0.8674
AT1G79220 Mitochondrial transcription te... Potri.007G069100
[exp]
4.89 0.8551
AT5G37530 NAD(P)-binding Rossmann-fold s... Potri.004G083200
[exp]
6.48 0.8247
AT1G74700 NUZ, TRZ1 tRNAse Z1 (.1) Potri.015G064400
[exp]
8.66 0.8051
AT5G63140 ATPAP29, PAP29 purple acid phosphatase 29 (.1... Potri.002G183000
[exp]
9.16 0.8258
AT1G66920 Protein kinase superfamily pro... Potri.015G018600
[exp]
12.48 0.8327
Potri.003G018400
[exp]
15.74 0.8296
AT2G28230 TATA-binding related factor (T... Potri.006G143400
[exp]
21.21 0.7884
AT4G22140 EBS EARLY BOLTING IN SHORT DAYS, P... Potri.002G226000
[exp]
22.44 0.8285

Potri.016G045800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.