Plant FIBer expression Database

Potri.016G045900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42130 366 / 1e-127 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
AT3G58010 338 / 1e-116 PGL34 plastoglobulin 34kD (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G192200
[exp]
454 / 3e-162 AT2G42130 361 / 1e-125 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004171
[exp]
377 / 7e-133 AT2G42130 378 / 3e-133 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Lus10012003
[exp]
366 / 2e-127 AT2G42130 383 / 3e-134 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Lus10016263
[exp]
337 / 1e-116 AT2G42130 346 / 1e-120 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Lus10021055
[exp]
271 / 2e-90 AT2G42130 286 / 1e-96 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5)
Lus10001099
[exp]
46 / 2e-05 AT4G22240 362 / 5e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Lus10014790
[exp]
46 / 2e-05 AT4G22240 363 / 2e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04755 PAP_fibrillin PAP_fibrillin
Representative CDS sequence
>Potri.016G045900.1 pacid=42810215 polypeptide=Potri.016G045900.1.p locus=Potri.016G045900 ID=Potri.016G045900.1.v4.1 annot-version=v4.1
ATGGCTTCTTCATCTTCATCTTCCTTAATTCAGGGATGCTCACTTCCTCCAATCTCTGCTCTTCGCTCACGCCTTTCTCCTTCGCTTTGTTCGTTTCAAT
CTTTGACCAAGTTACCAGAGAATTGCCGGAGGAGCTCAGACTACCGGGGAATCCGCCGGAGAATGACCTGCACTGCTATGGTACAGCAGGCTGTACAAGG
AGGATCTCCAGCAACCTATGCTAAGGAAATGGAGAGACTCGCTGCTAAGGAATCTCTGCTTCTCGCTTTCAAAGATTCTGGGGGCTTTGAAGCTCTGGTC
ACTGGAAAGACAACAGATATGCAGCGGATTGATGTGAATGAAAGAATAACTGGTCTTGAGCGGCTTAATCCAACACCTCGACCAACTACGTCACCATTTT
TGGAAGGTCGATGGAATTTTGAGTGGTTTGGAGCCGGAAGCCCTGGATTATCTGCTGCCAGGTTTATATTTGAGAGATTTCCTTCAAATTTGGCTAATTT
GTCCAAAATGGACGTGGTGATTAAGGATGGAAATGCAAAGGTTACTGCACATATGAAACTATTATACTCGATAGAAAGCAAATTCATTCTGTCCTCCAAG
TTAACAGTGGAGGGACCTCTCAGAATGAAAGAGGAATATGTTGAAGGGATCCTTGAGACACCAACAGTCATTGAAGAAACAGTACCTGAACAGCTAAAAG
GTGCATTTGGTCAGGCTCTTAGCACAGTCCAACAGATTCCTGTTTCTTTTAGGGATGCCTTTTCTAGCGGGCTGAAAATTCCTCTATCTAGTACTTTCCA
GAGACTCTTCATGATTTCTTATCTTGATGATGAGATACTTATTCTAAGGGATTCTATTGGAGTACCGGAAGTTGTTACAAGGTTGGATGCACCAGCCTCT
CTAATGGCAGAACCAATTGCAGAGTATGAGAGCTAG
AA sequence
>Potri.016G045900.1 pacid=42810215 polypeptide=Potri.016G045900.1.p locus=Potri.016G045900 ID=Potri.016G045900.1.v4.1 annot-version=v4.1
MASSSSSSLIQGCSLPPISALRSRLSPSLCSFQSLTKLPENCRRSSDYRGIRRRMTCTAMVQQAVQGGSPATYAKEMERLAAKESLLLAFKDSGGFEALV
TGKTTDMQRIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGAGSPGLSAARFIFERFPSNLANLSKMDVVIKDGNAKVTAHMKLLYSIESKFILSSK
LTVEGPLRMKEEYVEGILETPTVIEETVPEQLKGAFGQALSTVQQIPVSFRDAFSSGLKIPLSSTFQRLFMISYLDDEILILRDSIGVPEVVTRLDAPAS
LMAEPIAEYES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G42130 Plastid-lipid associated prote... Potri.016G045900
[exp]
0 1
AT1G06110 SKIP16 SKP1/ASK-interacting protein 1... Potri.015G078100
[exp]
5.74 0.9468
AT2G32040 Major facilitator superfamily ... Potri.010G085900
[exp]
7.68 0.8936
AT4G13010 Oxidoreductase, zinc-binding d... Potri.001G342800
[exp]
7.87 0.9087
AT1G16720 HCF173 high chlorophyll fluorescence ... Potri.007G003500
[exp]
9.53 0.9258
AT1G29730 Leucine-rich repeat transmembr... Potri.011G073241
[exp]
11.83 0.8912
AT2G28120 Major facilitator superfamily ... Potri.009G006400
[exp]
13.26 0.9131
AT3G17930 unknown protein Potri.015G036500
[exp]
13.30 0.9327
AT3G03620 MATE efflux family protein (.1... Potri.013G069600
[exp]
13.96 0.9177
AT5G38660 APE1 acclimation of photosynthesis ... Potri.004G102100
[exp]
14.07 0.9264
AT3G04870 SPC1, PDE181, Z... SPONTANEOUS CELL DEATH 1, PIGM... Potri.013G037700
[exp]
15.23 0.9095

Potri.016G045900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.