Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58000 120 / 9e-35 VQ motif-containing protein (.1) AT2G42140 115 / 6e-33 VQ motif-containing protein (.1) AT2G44340 96 / 4e-25 VQ motif-containing protein (.1) AT3G60090 79 / 1e-18 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G192100 [exp] 272 / 8e-95 AT2G42140 86 / 2e-21 VQ motif-containing protein (.1) Potri.001G230800 [exp] 96 / 1e-25 AT2G44340 79 / 6e-19 VQ motif-containing protein (.1) Potri.009G024200 [exp] 93 / 1e-24 AT3G58000 73 / 7e-17 VQ motif-containing protein (.1) Potri.001G029700 [exp] 44 / 5e-06 AT3G56710 54 / 5e-10 sigma factor binding protein 1 (.1) Potri.003G194700 [exp] 43 / 1e-05 AT3G56710 54 / 6e-10 sigma factor binding protein 1 (.1) Potri.005G057800 [exp] 43 / 3e-05 AT3G18690 124 / 2e-35 MAP kinase substrate 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004172 [exp] 77 / 4e-17 AT2G42140 72 / 2e-15 VQ motif-containing protein (.1) Lus10021054 [exp] 75 / 2e-16 AT2G44340 76 / 7e-17 VQ motif-containing protein (.1) Lus10024139 [exp] 43 / 3e-05 AT3G56710 58 / 5e-11 sigma factor binding protein 1 (.1) Lus10039494 [exp] 42 / 5e-05 AT3G56710 56 / 3e-10 sigma factor binding protein 1 (.1) Lus10039493 [exp] 40 / 0.0002 AT3G56710 54 / 1e-09 sigma factor binding protein 1 (.1) Lus10008659 [exp] 39 / 0.0006 ND 44 / 4e-06
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [poplar] [flax] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Potri.016G046000.2 pacid=42810103 polypeptide=Potri.016G046000.2.p locus=Potri.016G046000 ID=Potri.016G046000.2.v4.1 annot-version=v4.1 ATGGAGGAACTTATGATGAGGAAACAACCAGCAGCTTGTATCCCTACTTCAATTACTCCATCGCCAATCACCATGCATAAAAACTCACACACAATAGCCA AAGTCAAGCCAAAGATACGCATAATTCACATCTTTGCTCCAGAAATCATCAAGACAGATGCCGCGAACTTCAGAGAGTTGGTACAAAGACTCACAGGGAA ACCAAGTGATCAAAAGGGGGGTTGCAGGCAGAAACCAAGAAGGGCAAGAACACAAGATCAACCAAGAAACTGCAACAGCGACTTATGTGAAGAAAAGCCT GTTATGACCAAGAAAGTTGAGCCGAGAAGTGGGTTTGGGAGTAGTCTGGGGTCTAGAGAAAGAGTTAAGGAGGAAGAAGAAATGTGGAATGGAGCATATT CAGGAAGCTTCCTAGGTGGATTTACAGACTTGGATGGCTTCATTCAAGAACTTGGTGAATTTCCATTGCTGCCAATGGACGCTAATCACATACATGAGCT TGGACAGACTCAACTTGCCTAG
AA sequence Show only first row Show all	>Potri.016G046000.2 pacid=42810103 polypeptide=Potri.016G046000.2.p locus=Potri.016G046000 ID=Potri.016G046000.2.v4.1 annot-version=v4.1 MEELMMRKQPAACIPTSITPSPITMHKNSHTIAKVKPKIRIIHIFAPEIIKTDAANFRELVQRLTGKPSDQKGGCRQKPRRARTQDQPRNCNSDLCEEKP VMTKKVEPRSGFGSSLGSRERVKEEEEMWNGAYSGSFLGGFTDLDGFIQELGEFPLLPMDANHIHELGQTQLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58000			VQ motif-containing protein (....		Potri.016G046000 [exp]	0	1
AT2G45360			Protein of unknown function (D...		Potri.014G068900 [exp]	4.79	0.9430
AT5G66420			unknown protein		Potri.005G120100 [exp]	7.34	0.9397
AT3G22800			Leucine-rich repeat (LRR) fami...		Potri.010G083000 [exp]	9.48	0.9373
					Potri.019G016110 [exp]	10.24	0.9384
AT1G68940			Armadillo/beta-catenin-like re...		Potri.008G112900 [exp]	12.00	0.8421
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.016G057300 [exp]	13.03	0.8618	Pt-ZOG1.8
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.004G090600 [exp]	14.00	0.9383
AT4G35220			Cyclase family protein (.1)		Potri.001G301700 [exp]	17.32	0.9262
AT2G45220			Plant invertase/pectin methyle...		Potri.015G127700 [exp]	18.33	0.9285	Pt-PME.5
					Potri.018G118900 [exp]	18.49	0.9272

Compare expression of checked genes

Potri.016G046000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.