Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06770 266 / 2e-89 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT3G12130 263 / 4e-88 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT3G19360 49 / 2e-06 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT1G32360 46 / 1e-05 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT2G35430 40 / 0.0007 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G68200 40 / 0.0008 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G191900 [exp] 478 / 4e-172 AT3G12130 256 / 2e-85 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.001G013200 [exp] 332 / 2e-114 AT5G06770 169 / 2e-51 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.003G213200 [exp] 325 / 8e-112 AT5G06770 162 / 1e-48 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.004G169500 [exp] 54 / 5e-08 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1) Potri.003G061600 [exp] 53 / 5e-08 AT3G19360 109 / 1e-27 Zinc finger (CCCH-type) family protein (.1) Potri.009G130600 [exp] 50 / 5e-07 AT3G19360 276 / 9e-91 Zinc finger (CCCH-type) family protein (.1) Potri.001G140800 [exp] 44 / 0.0001 AT1G32360 355 / 3e-121 Zinc finger (CCCH-type) family protein (.1) Potri.003G093600 [exp] 44 / 0.0001 AT1G32360 353 / 2e-120 Zinc finger (CCCH-type) family protein (.1) Potri.018G004000 [exp] 42 / 0.0004 AT4G26000 429 / 4e-147 PEPPER, RNA-binding KH domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004183 [exp] 337 / 2e-115 AT5G06770 261 / 8e-86 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10021043 [exp] 332 / 3e-114 AT5G06770 262 / 1e-87 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10016272 [exp] 314 / 1e-107 AT3G12130 229 / 5e-75 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012017 [exp] 179 / 2e-56 AT3G12130 186 / 8e-60 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012016 [exp] 82 / 5e-20 AT3G12130 73 / 2e-17 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012015 [exp] 62 / 3e-12 AT3G12130 66 / 1e-14 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10019431 [exp] 58 / 2e-09 AT3G19360 266 / 2e-87 Zinc finger (CCCH-type) family protein (.1) Lus10043287 [exp] 47 / 6e-06 AT3G19360 290 / 7e-96 Zinc finger (CCCH-type) family protein (.1) Lus10004573 [exp] 45 / 3e-05 AT1G32360 342 / 1e-116 Zinc finger (CCCH-type) family protein (.1) Lus10000486 [exp] 45 / 4e-05 AT1G32360 337 / 6e-115 Zinc finger (CCCH-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) CL0537 [poplar] [flax] CCCH_zf PF14608 [poplar] [flax] zf-CCCH_2 RNA-binding, Nab2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.016G046600.1 pacid=42809757 polypeptide=Potri.016G046600.1.p locus=Potri.016G046600 ID=Potri.016G046600.1.v4.1 annot-version=v4.1 ATGATGGATACAAGAAAGAGAGGGAGACCTGACTTCGGCACTAATGGTTATGGTGGATTCAAGAAATCTAAGCAAGAAATGGACTCCTTATCAACTGGTG TAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGTACTGCTGGCTGTCCATTTGGCGAGAGCTGCCACTTTCTCCACCATGTTCCCGGTGGCTACAA GGCTGTGGCCCAGATGGTGAATCTGGGACCTACTGTTGCTTTACCGCCTGTACCTAACAGCTCTGCTCCGTCTGCTGTTAAAAGCCGGCTATGCAAAAAA TACAATAGTGCTGAAGGTTGCAAATTTGGTGATAAATGCCATTTTGCGCATGGCGAGTGGGAACTTGGCAAGGCTTTTGTTCCATCCCACAACGATCCTC ATGCTGCTGGAAGTGTTCCAGGACGTCTGGGTGGTCGGGTGGAGCCACCCCCTCCTGGCCCCGCCACCAGCTTCGGTGTCTTTGCCACCACTACAAGAAT CAGTGTAGATGCCTCCCTTGCTGGATCCATCATTGGTAAGGCTGGTGTGCATTCCAAGCAGATCTGCCGCCAAACAGGAATCAAGCTATCTATTAAGGAT CATGAAACAAATCCAAATCTCAAGAACATTGAGCTAGAGGGGTCTTTGGAACAGATTGCCCAAGCTAGTAAGATGGTAGAAGAGCTTGTGAGGGTGACTT CAGCAAATGCCGCTGCAAAATCCTCTGGGGGTCATGCCAACCCAGGAAGCAACTATAAGACTAAGTTGTGTGACAATTTTGCCAAAGGGTCTTGCACTTT TGGTCAAAGGTGCCATTTTGCTCATGGGGCTGCTGAATTGCGCAAGTCATCAGTGTGA
AA sequence Show only first row Show all	>Potri.016G046600.1 pacid=42809757 polypeptide=Potri.016G046600.1.p locus=Potri.016G046600 ID=Potri.016G046600.1.v4.1 annot-version=v4.1 MMDTRKRGRPDFGTNGYGGFKKSKQEMDSLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHHVPGGYKAVAQMVNLGPTVALPPVPNSSAPSAVKSRLCKK YNSAEGCKFGDKCHFAHGEWELGKAFVPSHNDPHAAGSVPGRLGGRVEPPPPGPATSFGVFATTTRISVDASLAGSIIGKAGVHSKQICRQTGIKLSIKD HETNPNLKNIELEGSLEQIAQASKMVEELVRVTSANAAAKSSGGHANPGSNYKTKLCDNFAKGSCTFGQRCHFAHGAAELRKSSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06770	C3HZnF		KH domain-containing protein /...		Potri.016G046600 [exp]	0	1
AT3G13350	ARID		HMG (high mobility group) box ...		Potri.011G168800 [exp]	2.44	0.8489
AT5G64816			unknown protein		Potri.002G105400 [exp]	2.64	0.8541
AT3G53340	CCAAT	NF-YB10	"nuclear factor Y, subunit B10...		Potri.016G085000 [exp]	4.12	0.8021
AT5G22210			unknown protein		Potri.004G201000 [exp]	5.00	0.8484
AT1G05785			Got1/Sft2-like vescicle transp...		Potri.014G151000 [exp]	5.91	0.8271
AT3G60480			unknown protein		Potri.014G054300 [exp]	6.32	0.8259
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Potri.011G154800 [exp]	6.63	0.8170	LSD1.2
AT1G65000			unknown protein		Potri.013G078866 [exp]	6.92	0.8449
AT3G62190			Chaperone DnaJ-domain superfam...		Potri.002G188300 [exp]	8.06	0.8140
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Potri.003G098000 [exp]	10.95	0.8196

Compare expression of checked genes

Potri.016G046600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.