Plant FIBer expression Database

Potri.016G046802 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51130 360 / 1e-122 Nse4, component of Smc5/6 DNA repair complex (.1)
AT3G20760 329 / 9e-111 Nse4, component of Smc5/6 DNA repair complex (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T028032
[exp]
388 / 1e-133 AT1G51130 395 / 3e-136 Nse4, component of Smc5/6 DNA repair complex (.1)
Potri.003G212600
[exp]
387 / 4e-133 AT1G51130 394 / 9e-136 Nse4, component of Smc5/6 DNA repair complex (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039205
[exp]
358 / 1e-121 AT1G51130 369 / 1e-125 Nse4, component of Smc5/6 DNA repair complex (.1)
Lus10013735
[exp]
354 / 8e-120 AT1G51130 368 / 2e-125 Nse4, component of Smc5/6 DNA repair complex (.1)
Lus10042459
[exp]
300 / 6e-99 AT1G51130 342 / 3e-115 Nse4, component of Smc5/6 DNA repair complex (.1)
Lus10004185
[exp]
127 / 1e-34 AT3G20760 94 / 1e-22 Nse4, component of Smc5/6 DNA repair complex (.1)
Lus10021041
[exp]
125 / 6e-34 AT1G51130 108 / 6e-28 Nse4, component of Smc5/6 DNA repair complex (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08743 Nse4_C Nse4 C-terminal
Representative CDS sequence
>Potri.016G046802.1 pacid=42810038 polypeptide=Potri.016G046802.1.p locus=Potri.016G046802 ID=Potri.016G046802.1.v4.1 annot-version=v4.1
ATGACCCGACCCGTCAAACGCGAACCCCACATTACCCCCCATCCTGCTGCTGCTGGTAGTACTAGCAGCAGCAGCAGACTCAATAATGGTGGAGCCGAAA
CGAGCGATATGGACAGTCAAGAGGCCACTGAACGGAGACATCTCCGTTCACGTTACCGTGACGTGAAGAGAATCATAATTGATGGAAGAGAGGACGTTGA
AAGGGTTGATTCTGATAAGTTTAATTCCATTATTAATCAAGTGGAGGACTTGCACAAATTGGTGCAGAAACCTAGAGAACAAGTTGCTGATGCAGAGGCT
TTATTGGATATAACAAACTCTTTGGTAGCCTCTGTTAAGGCGCATGGACATGATGGAATAACACCTTCAGATTTTGTCAATGGTCTCCTTAGAGATTTTG
GCCGACAAGATGGGCCTAGTACTAGTGCTGACGGTAGCAGAAATTTGATTGCTTGGAAAGATATTGGAGTTGCTGTCTCACATATTTTCAGTAGTTGTCC
TGGATGCTGTACCATGGTTGGGCCGATGGATACTGAGTTAAAGCAACGGAAGGCTGTTGTTGGTAGAAGACGTACAAGACCAACCGGAAGTGTTCAACCC
GAAGAGGTCAATGACAGTGGTGCAAAGGAGAGAACAGATACTGACAAAAATATGGCAACTATGTTTAGTATTTTAAAGAATAAAAGAAGTGTCAAGCTTG
AAAATTTGGTTTTGAATAGAAACTCTTTTGCACAGACAGTGGAGAATTTGTTTGCTTTGTCATTTCTAGTTAAAGATGGAAGGGCTGAAATAAAAGTGAA
TGAGAATGGCTGGCATCTTGTTTCTCCAAGGAATGCGCCTGATGCTGGTAAAGTAGTCTCGGGGGAGGTAGCTTACCGGCACTTTGTCTTCAGATTTGAC
TTCAAGGATTGGAAGTTGATGATATCTGCTGTTGAGGTAGGGGAGGAGCTAATGCCAAATAGGAATCAAATAAACATGCCAAGTGATAGCCTAGCAGATC
CGATACCTGTAGAAACTCAGGCAGGAGGACCTACCACTCCCATTCGGAAGTTCTCCAGGAACCGTGGTTTGGTTTTACAAGAGAAGACAGTTGTGGAAGA
CTCAACTCCTGAGAACGATAATATCCAAGTAAGAATACCCGCTTTTCGGAAAGGGAAGCGAAAAATGAGGTGA
AA sequence
>Potri.016G046802.1 pacid=42810038 polypeptide=Potri.016G046802.1.p locus=Potri.016G046802 ID=Potri.016G046802.1.v4.1 annot-version=v4.1
MTRPVKREPHITPHPAAAGSTSSSSRLNNGGAETSDMDSQEATERRHLRSRYRDVKRIIIDGREDVERVDSDKFNSIINQVEDLHKLVQKPREQVADAEA
LLDITNSLVASVKAHGHDGITPSDFVNGLLRDFGRQDGPSTSADGSRNLIAWKDIGVAVSHIFSSCPGCCTMVGPMDTELKQRKAVVGRRRTRPTGSVQP
EEVNDSGAKERTDTDKNMATMFSILKNKRSVKLENLVLNRNSFAQTVENLFALSFLVKDGRAEIKVNENGWHLVSPRNAPDAGKVVSGEVAYRHFVFRFD
FKDWKLMISAVEVGEELMPNRNQINMPSDSLADPIPVETQAGGPTTPIRKFSRNRGLVLQEKTVVEDSTPENDNIQVRIPAFRKGKRKMR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G51130 Nse4, component of Smc5/6 DNA ... Potri.016G046802
[exp]
0 1
AT4G36980 unknown protein Potri.007G044100
[exp]
2.82 0.8999
AT5G44800 PKR1, CHR4, MI-... PICKLE RELATED 1, chromatin re... Potri.010G172100
[exp]
3.46 0.8725
AT3G20475 ATMSH5 MUTS-homologue 5 (.1) Potri.011G089500
[exp]
4.89 0.8311
AT1G01020 ARV1 Arv1-like protein (.1.2) Potri.002G181700
[exp]
6.32 0.7870
AT1G16650 S-adenosyl-L-methionine-depend... Potri.007G065300
[exp]
7.34 0.8134
AT5G62760 P-loop containing nucleoside t... Potri.015G064600
[exp]
7.93 0.8284
AT4G36980 unknown protein Potri.005G138200
[exp]
8.48 0.8684
AT1G05350 NAD(P)-binding Rossmann-fold s... Potri.012G097700
[exp]
8.94 0.8475
AT3G45100 SETH2 UDP-Glycosyltransferase superf... Potri.016G130000
[exp]
10.00 0.8110
AT1G04080 PRP39 Tetratricopeptide repeat (TPR)... Potri.002G257100
[exp]
10.67 0.7886

Potri.016G046802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.