Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57990 344 / 7e-118 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G191800 [exp] 512 / 0 AT3G57990 299 / 1e-99 unknown protein Potri.003G088500 [exp] 124 / 2e-32 AT3G57990 58 / 5e-09 unknown protein Potri.001G145400 [exp] 120 / 6e-31 AT3G57990 80 / 3e-16 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021042 [exp] 312 / 4e-105 AT3G57990 341 / 6e-116 unknown protein Lus10012013 [exp] 302 / 2e-101 AT3G57990 296 / 3e-98 unknown protein Lus10016270 [exp] 299 / 4e-100 AT3G57990 300 / 4e-100 unknown protein Lus10004184 [exp] 299 / 5e-100 AT3G57990 329 / 3e-111 unknown protein Lus10016269 [exp] 165 / 7e-51 ND 169 / 1e-52 Lus10012012 [exp] 163 / 4e-50 ND 164 / 2e-50 Lus10000401 [exp] 103 / 5e-27 AT3G57990 107 / 4e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G046900.1 pacid=42810278 polypeptide=Potri.016G046900.1.p locus=Potri.016G046900 ID=Potri.016G046900.1.v4.1 annot-version=v4.1 ATGAAAGCCTCACTAAAATTCCGGGAAGAGCAAAACCCGGTATTTAGAGCCAAAGTGCCACTCAACATCTTGGGTTTACCATTTCAATCAGGAATTATAG CCGGAGAGTCCAAAGAACTTTCTTTAAATCTCTCTACTTTCTTCCAATCTGGACCCTCCATCAAAATCGCTTACCGTCCTAGTGACACGTGGAACCCCTT CTCCCTCGTTATCAAAACCGGAACCGGTCACTTCGGTTCTCCGGTTTCTAGCTCCATGATTATGAGTGCGGAGTTCAATCTATTGAGTAAAGGTAATAGT AATTTAAACCCTAGCTTTATGCTCCACTTCAAGCCTCAGTTTGGGGATTTTTCGATTAAGAAGTCGCAGTCGTCGACTCACGTGAGTCATCTGACGGGGT CGATTCTGAACGGGGGCGCTTCGTCTGATGATCATGGGTCGATTGAGGCCGTTGAGGCTGCGACTCCGACTCCGGATGTGGTTGATGGCGTGTTTTGTGG GAAGAGGATTACGGTTTTGCCACCGGTGACGGCGAGTGCGGTTGCGGGATTGTTTTCTGGTGTGGAGGTTACGGCGAAGACGAGGCTTCCAGTGAGGAGC AAGGCGGTGGTGAGTTTCCGGTGGGGAGTTCGGGTTCCGGCTGAAATTAAGAGTGGCGGTGAATCAACGGCTGGGATTAATTTTAGGACGATACCGGTCT TTGTGATGAATAAGATTGGAATTGAACACGTGGATGGTAGAGATGAGAGGAGTAAGAAAGAGGGGACGACAGGGAAGGTGGAGATGGATTCGGGGAATGC TGAGGTGGCAGAGGCGTGTTTGGGTGTGAAAAGGCAATTAGAGGTTTTGCAGAGTGAGAACGGGCATTTGAGGAAAGCAGTGGAGGAATTGAGTGAAGAA ATTGGCGGAGGGAAATTATTAGTTGGGGATTTGGATTCTGGAAAATACGAGAGAAATGGAATTAAAAGCCTCGAGTAG
AA sequence Show only first row Show all	>Potri.016G046900.1 pacid=42810278 polypeptide=Potri.016G046900.1.p locus=Potri.016G046900 ID=Potri.016G046900.1.v4.1 annot-version=v4.1 MKASLKFREEQNPVFRAKVPLNILGLPFQSGIIAGESKELSLNLSTFFQSGPSIKIAYRPSDTWNPFSLVIKTGTGHFGSPVSSSMIMSAEFNLLSKGNS NLNPSFMLHFKPQFGDFSIKKSQSSTHVSHLTGSILNGGASSDDHGSIEAVEAATPTPDVVDGVFCGKRITVLPPVTASAVAGLFSGVEVTAKTRLPVRS KAVVSFRWGVRVPAEIKSGGESTAGINFRTIPVFVMNKIGIEHVDGRDERSKKEGTTGKVEMDSGNAEVAEACLGVKRQLEVLQSENGHLRKAVEELSEE IGGGKLLVGDLDSGKYERNGIKSLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57990			unknown protein		Potri.016G046900 [exp]	0	1
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.014G164300 [exp]	1.00	0.9324
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Potri.006G067700 [exp]	2.00	0.9159
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.019G036800 [exp]	2.44	0.9224
AT5G51280			DEAD-box protein abstrakt, put...		Potri.004G224000 [exp]	3.46	0.8965
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Potri.001G327000 [exp]	3.46	0.9127
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.011G089901 [exp]	3.74	0.9122
AT1G11050			Protein kinase superfamily pro...		Potri.017G133000 [exp]	4.24	0.9236
AT2G30880			Pleckstrin homology (PH) domai...		Potri.002G057300 [exp]	4.69	0.8869
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.006G203000 [exp]	5.65	0.9081
AT1G07470			Transcription factor IIA, alph...		Potri.001G244204 [exp]	5.74	0.8787

Compare expression of checked genes

Potri.016G046900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.