Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22355 238 / 9e-69 Cysteine/Histidine-rich C1 domain family protein (.1) AT4G11550 207 / 2e-57 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G37620 203 / 3e-56 Cysteine/Histidine-rich C1 domain family protein (.1) AT4G02190 199 / 7e-55 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G45730 194 / 7e-54 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G04680 194 / 4e-53 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40320 192 / 6e-53 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G59940 193 / 7e-53 Cysteine/Histidine-rich C1 domain family protein (.1) AT4G01350 192 / 1e-52 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G19660 191 / 3e-52 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G044732 [exp] 1147 / 0 AT5G22355 261 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044600 [exp] 1115 / 0 AT5G22355 260 / 7e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044800 [exp] 1105 / 0 AT5G22355 260 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047200 [exp] 1102 / 0 AT5G22355 242 / 3e-70 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047300 [exp] 1089 / 0 AT5G22355 234 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044200 [exp] 1048 / 0 AT5G22355 203 / 3e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G057800 [exp] 781 / 0 AT5G22355 273 / 4e-82 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044432 [exp] 603 / 0 AT5G45730 135 / 7e-35 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.019G020100 [exp] 154 / 6e-39 AT2G21840 239 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017477 [exp] 66 / 1e-11 AT2G16050 340 / 4e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10003919 [exp] 54 / 9e-08 AT2G44380 179 / 2e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10037470 [exp] 55 / 1e-07 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10016256 [exp] 54 / 2e-07 AT2G27660 107 / 8e-26 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10028723 [exp] 44 / 0.0003 AT1G20990 269 / 9e-89 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [poplar] [flax] C1 PF03107 [poplar] [flax] C1_2 C1 domain
Representative CDS sequence Show only first row Show all	>Potri.016G047000.1 pacid=42810036 polypeptide=Potri.016G047000.1.p locus=Potri.016G047000 ID=Potri.016G047000.1.v4.1 annot-version=v4.1 ATGGAGGTTGAACATTTTAGCCACCCGTATCATCCATTGATCCTCATTAATCAAATTCTCGAATATAGTTGTGAACTAGTAATGTGCTCTGGATGCGAGG GACCAATATGGGGTTCTTGCTACAGTTGCACCTCTTGCTACTTCTTTCTTCATAAGAAATGCGCCGAGCTGCCCCGTGAGATCAAGCGGCGCATTCATCG TAGACACCCTCTCCATCTACTGGCAAAGCCACCATATAAAATAGAATGCTATTGTAATCGGTGCAACAAAACTTGGAAGAGTTTTATTTACCATTGTTCT TTCTGTGAATTTGATCTTGATATCAAATGTGCTTTTCAACCGGGTTTTTTGGAAGTCGATAGTCAGGCACATCAATTTGCCCACAAGGATCATCCATTGG TTTTGAATGAAGAGAAAGAATATCATGGTGAAGGAGTTGTGTGCTCTGTGTGCAAGGAACCAATGTCTGGTCCTAGCTATAGTTGCACTTCTTGCAACGT CTTTCTTCACAAGAAGTGTGCTGAGCTACCCCCAGAGATCAAGAGGCACATTCATCCAGAACACCCTCTTCGTCTACTGCCAAATCATCACATGATCTGT AGTTTTTGCAAAGAAACTTGCTATGAGAGTTTTGCTTACTGCTGTTTTGTGTGCGAATTCAACCTCCATATCAAATGTGCTTTTCCACCGTGCGTTTATG CAGCTGATCAGGATCAGGGGCATCAATTTAGAAGCCTGCTGAATCCACGTTCATTCAAATCAATCTCCTTCACTTGCAATGCATGCGGCACGGATGGATA TGGCTCCCCATTCATGTGCACCATGTGCCAACTCGTGGTCCACGAAGAATGCATTTCATTGCCAGGCACCCTTAAAACAGCACTGCACCATCATCCCCGA ATCATCCACACCTATCATCCTCAACAATGCATCGAATCTATAAACAAGTACTGTGGAATTTGCTGTCGGGAAGTTGACACAGAATACGGAGTTTACTACT GCCCAGACTGTGACTTTGTTGCACACGTGAATTGTAGCAGAGAATATGGCGATTCGGCAACAGAGACTGGAGGAGAAAACGAAGAAGAGCAAAGTGTGAC TGTTGATGATCAATTCATGGAACCTAGCTTTCGCGTTGTCCGTGAGATCAAGCATGGAGAGGAGAGAATAATTGAAGAGATCGAGCATTTCAGTCATCAA CATAACCTAATCCTTATTGACAAGGTTGATGATGATCTAAAGTGTGATGGGTGCATGTTACCAATCTCAACTCCATTTTATAGTTGTGCCAGTTGTAATT TCTTTCTTGACAAAACCTGCATGGAATTACCCAGGCGAAAAAAGTGGCAATATCACGAAAACCAACTGATTCTTTCACGGAGCCGAGGGCCATATGAGCT GTTCTACTGTGATGTGTGTAATCAAACTTCTCATGGGCTCAGGTACAAATGTAATGTATGTGCACTCCGGATTGATGTCCGATGCTTCAAATCATTGAAA GATTCTTTTAAACATGGAGGTCATGAGCATCCCCTTAATCTTCCAACGGACAGAAAGAGTATTCTCCGTTGCCGTATTGGAGGTTACGGGCTTCCCCCTT TGCTTGCAGATGACACAGAGATTATTCCCCATTGCAGTGGCTGTTGTGTCAGTGAAGAATCAAAGGTATTTTTTAAATGTGCGGTTTGCGATTTCAAGCT GGGTATGAAATGTGCTACAGTGCCATACAAAGCAAGACACAAGTATGATGACCATCCTCTCTTCCTCACCTACATTAATGAAAATGACTACCAACCTTCC TGTATAATTTGTGAAAAAGATAGAGACCCAAAGCTCTGGTTCTACCGTTGTGAGGAATGCGACTTCGATGCTCATCCTGAATGTGCTCTCGGGAGAGACC CATATGTCAAGCTAGGGGGCGTCCACACATATCGTAAACACCCTCACCCTCTTGTTTTGGTCGACAAGACAGAGGATTATGCAGCATGCGATACTTGTGG TGAGCCTTGCGATGACTTGGCCCTTGAATGTACTGATACTGAATGCAGTTTTATCGTCCACAGGAAAAGAGGGCAATGCTTTTACTCATTACTGTAA
AA sequence Show only first row Show all	>Potri.016G047000.1 pacid=42810036 polypeptide=Potri.016G047000.1.p locus=Potri.016G047000 ID=Potri.016G047000.1.v4.1 annot-version=v4.1 MEVEHFSHPYHPLILINQILEYSCELVMCSGCEGPIWGSCYSCTSCYFFLHKKCAELPREIKRRIHRRHPLHLLAKPPYKIECYCNRCNKTWKSFIYHCS FCEFDLDIKCAFQPGFLEVDSQAHQFAHKDHPLVLNEEKEYHGEGVVCSVCKEPMSGPSYSCTSCNVFLHKKCAELPPEIKRHIHPEHPLRLLPNHHMIC SFCKETCYESFAYCCFVCEFNLHIKCAFPPCVYAADQDQGHQFRSLLNPRSFKSISFTCNACGTDGYGSPFMCTMCQLVVHEECISLPGTLKTALHHHPR IIHTYHPQQCIESINKYCGICCREVDTEYGVYYCPDCDFVAHVNCSREYGDSATETGGENEEEQSVTVDDQFMEPSFRVVREIKHGEERIIEEIEHFSHQ HNLILIDKVDDDLKCDGCMLPISTPFYSCASCNFFLDKTCMELPRRKKWQYHENQLILSRSRGPYELFYCDVCNQTSHGLRYKCNVCALRIDVRCFKSLK DSFKHGGHEHPLNLPTDRKSILRCRIGGYGLPPLLADDTEIIPHCSGCCVSEESKVFFKCAVCDFKLGMKCATVPYKARHKYDDHPLFLTYINENDYQPS CIICEKDRDPKLWFYRCEECDFDAHPECALGRDPYVKLGGVHTYRKHPHPLVLVDKTEDYAACDTCGEPCDDLALECTDTECSFIVHRKRGQCFYSLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047000 [exp]	0	1
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044732 [exp]	1.00	0.9453
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044800 [exp]	1.41	0.9420
AT5G45730			Cysteine/Histidine-rich C1 dom...		Potri.016G044432 [exp]	1.73	0.9248
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.011G165700 [exp]	4.00	0.8939
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.015G074000 [exp]	8.36	0.8091	Pt-TPS8.2
AT3G01930			Major facilitator superfamily ...		Potri.001G329100 [exp]	9.16	0.8661
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003600 [exp]	10.81	0.8567
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.017G016600 [exp]	10.95	0.8479
AT3G14470			NB-ARC domain-containing disea...		Potri.015G121800 [exp]	14.14	0.8605	FRGA-A30.27
AT5G17680			disease resistance protein (TI...		Potri.019G070700 [exp]	17.97	0.8291

Compare expression of checked genes

Potri.016G047000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.