Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20970 68 / 3e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G191500 [exp] 471 / 1e-145 AT1G20970 309 / 6e-86 unknown protein
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G047500.1 pacid=42810506 polypeptide=Potri.016G047450.1.p locus=Potri.016G047500 ID=Potri.016G047500.1.v4.1 annot-version=v4.1 ATGTCAGCAGATTTTAACGTGATATGTGGATTGTATGAGGCTGAAGCAGCTAGTCAGAAGGATACCAGTGTTGATTGTAATGGTGACAAGAATGATGATG GTCCTGTCAATGCGGGAGCTGATCAGGTTGGGGAATTGAAGGGTGATGGGGTGGAATCTGAGTCCAAAACCGGTGTCCGTGACGATCAAGAAAATATTCA GTCTGCGGAGGAGGAGAGGGAAGAAAAGCCGGTGGAAATCTTGGAAGATCCAGATGTAGAAGGGAACAAACAGGAGTTAATTAATCACGATGAACTCTCA AATGCAGTGGCAGAAGCTCAGGAATACCAATCCACTAGTGTGGATGTTGCTGAGTCTGAGCAAAATCGATCAAGTAATGATGAGGAGGAAAGCAACTTTA ATTTGTCCATTGACGTAAAAGGACATGAAGATTCTCAGGCCGTAGTTATCGATGGTGTTCATAATTATTTGGGTTTGCATTTGGATCAGCAGAGTGACCC GGTGGAATTGAACAAAACTGATGATGTTGCGGAATCCGAGCCCAATCAGTATAGGAATGATGATAAGAAGATTGAGGAAAGCAAATTAGGTTCGAAAGAT TCTCAGACTGAAGTTAGCAAGGGTCTTCATAATAGTTTGGACTTGTATCGGGAGAATAAACCCAAGGAATTGACGAATGGTGATGATTTTACTGAATCCA AACCAAAACCATCTAGCAATGATGGGGAGAAAGTAGGGTTAGAGGAGAAAAGCAAATTGGACTCAGCCATCCAATTAGACGAAGACAAATTATCTCAGCC TGTTGTTATCAATGGTGTTCATAATAATTTGGATTTGAACCAGGAGAAGGAACCGTCTGAATTGATCAATGATGTTCCCCTGAAAGATTCTGGTGAGGCG TCTGGGGATTCTCTCGAGCAGAACTCGGAAACAGCCCCAGTTGTGGCTGATGAAATACTGGAAGCAGAATCTGATGAAGGTCTTTTATCCGATGGAAATA GAGAAGGTTTATCTGCTGGTCATGCTCAAGATACTGTTGCAGAAACTCAGGTTGTTGATAGCCTGGTTGATGCCAAACAAAATTTGTCTGAGAGCTCTTC CGAAAATGTTGAACTCGGAGCAACTTCTGATGCTGAAACTGGTAAGAGTTTTCCAATTGCTAGTGATAATGGTACATCAGGAGACGCAACAAATCACATC CTCAAGGATGCTGTGCAATCAGAGGTGCTGGCTGCCAATGGCCTTGATATTCATGAAGAAGACTTGCTTGTCAACCTGGAAAGTGCTTCACAAACTGTTC TTGTAAATGACCTTGTTCATGCCAGTCAAATGACATCTGAGCATAGTCATACCTTGGAAATCAGCATGGAAGTGTCCTCCGATAATGTTGCATCTGTTAA AAGTTGTGAAAGTTTCCCAATTTCTCCTAGCAATGATGATATGGTGGCAGAACTAGCTGTCGGAATTAATGATTCTCTATCAGTGGAAGATACAAAGCTA TGTGATATTGCGAGAACAGAGACGGAGGTTGATAGCTTACATGCTGATGATAGTGGAATTACTGAAGTTGATGCAAAAGTAGAAGCTGGAGATGATAATT GCCCTGCTTATGATGTGAAGCCAGATATTGGGACTGTTTCCCCTTCCATTGAACCAGAAGAGAAAGTATCTTCAAGCAGCCCTGCTAATGATGTGAAGCC AGATATTGGGACTGTTTCCCATTCCATTGAACCTGAAGAGAAAGTATCTTCAAGCAGCCCTGCTAATGATGTGAAGCCAGATATTGGGACTGTTTCCCCT TCCATTGGATCTGAAGAGAAATTATCTTCAAGCAGCCCTGCTAATGATGTGAAGCCAGATATTGGGACTGTTTCCCCTTCCATTGAACCTGAAGAGAAAG TATCTTTAAGCAGCCCTGCTAATGATGTGGAGCCAGATATTGGGACTGTTTCTCATTCCATTCAACCTGAAGAGAAAATAGATATTGTTGCTGCTGAGGT GGGGAAAGGAGCTTTGAAAGTAGATGTTGCTGAGGTGAGGAAAGGAGCTTTGAAAGTAGATGTTGTTGCTGAGGTGAGGAAAGGAGCTTTCGATGTCACC AAGTTTCCAAGATATGATGAAAATAACAAAGAAGAGGTAAAACATGATAAATTTAAAGTTGAGAAGAGTAGTAAAAGTCGGGATGCTATTCAACCTCAAA TCCAAATGAAAAAGTTTGGGGACCAAAAGAATCAGACCGCTAAAACTAAAGGGCATGCAAAACCTGCTGCTTTGGAGAATGGTTCACTAACTGTTGGTGG AAAGTATTGGATTGAAGAGCCAAGACAAGATGAGAATAAGCTGATTAAGGCGGAAGAAGAGTTGGCTAGGAAGGCAAGACAAGATGAGAATAAGCGGATT AAGGCGGAAGATAAGTTGGCTAGGAAGGCAGAGGAATTGAGAAAGGAAAAGGAAGCAGCCATGTTAAAGGAGCAACGGAGATTGGAGGAGAATGCCAAAG CTAAAGAGGCAATGGAGAGGAAGAAACGAATGGCAGACAGGGCTCAAGCCAGGGCTGCACTCAGAGAACAGAGGGAAGCTGAGCAGAAAGAGAAGGAAAG GGAGAAGAAGGCAAGGAAGAAGGAAAGGAAGAAGGCAGCAGTAGAGGATACTAAAGATATCGATGAGATTGAATCTTCTCCTAGTTCTGAAACTCCTATT GAAATGGAGGAGTCTGAAAGAACAGAAAAACCTGTGACAAAGAGGCCTCAAAACCCATCAGAGTTTGCAAAGCAGACCAAGTATAAATCAATGCCTCTGC CGCTTCGCAACAGGGGTAAGAGAAAGAGGCAGACATGGATGTGGGCCCTTCTCTCACTGCTTGTTGTTATCGCCTTGTTTTTTGTGGGGAACAGCGGCTT CTTTCATGTTGTGCTGCAAAGGTCTGGCATCTAA
AA sequence Show only first row Show all	>Potri.016G047500.1 pacid=42810506 polypeptide=Potri.016G047450.1.p locus=Potri.016G047500 ID=Potri.016G047500.1.v4.1 annot-version=v4.1 MSADFNVICGLYEAEAASQKDTSVDCNGDKNDDGPVNAGADQVGELKGDGVESESKTGVRDDQENIQSAEEEREEKPVEILEDPDVEGNKQELINHDELS NAVAEAQEYQSTSVDVAESEQNRSSNDEEESNFNLSIDVKGHEDSQAVVIDGVHNYLGLHLDQQSDPVELNKTDDVAESEPNQYRNDDKKIEESKLGSKD SQTEVSKGLHNSLDLYRENKPKELTNGDDFTESKPKPSSNDGEKVGLEEKSKLDSAIQLDEDKLSQPVVINGVHNNLDLNQEKEPSELINDVPLKDSGEA SGDSLEQNSETAPVVADEILEAESDEGLLSDGNREGLSAGHAQDTVAETQVVDSLVDAKQNLSESSSENVELGATSDAETGKSFPIASDNGTSGDATNHI LKDAVQSEVLAANGLDIHEEDLLVNLESASQTVLVNDLVHASQMTSEHSHTLEISMEVSSDNVASVKSCESFPISPSNDDMVAELAVGINDSLSVEDTKL CDIARTETEVDSLHADDSGITEVDAKVEAGDDNCPAYDVKPDIGTVSPSIEPEEKVSSSSPANDVKPDIGTVSHSIEPEEKVSSSSPANDVKPDIGTVSP SIGSEEKLSSSSPANDVKPDIGTVSPSIEPEEKVSLSSPANDVEPDIGTVSHSIQPEEKIDIVAAEVGKGALKVDVAEVRKGALKVDVVAEVRKGAFDVT KFPRYDENNKEEVKHDKFKVEKSSKSRDAIQPQIQMKKFGDQKNQTAKTKGHAKPAALENGSLTVGGKYWIEEPRQDENKLIKAEEELARKARQDENKRI KAEDKLARKAEELRKEKEAAMLKEQRRLEENAKAKEAMERKKRMADRAQARAALREQREAEQKEKEREKKARKKERKKAAVEDTKDIDEIESSPSSETPI EMEESERTEKPVTKRPQNPSEFAKQTKYKSMPLPLRNRGKRKRQTWMWALLSLLVVIALFFVGNSGFFHVVLQRSGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20970			unknown protein		Potri.016G047500 [exp]	0	1
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Potri.015G087500 [exp]	3.87	0.9249
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Potri.015G087400 [exp]	4.47	0.9227	Pt-CYSP2.1
AT3G05327			Cyclin family protein (.1)		Potri.005G033600 [exp]	5.29	0.9432
AT2G14095			unknown protein		Potri.017G050000 [exp]	5.91	0.9187
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.001G404400 [exp]	6.00	0.9209	Pt-ATNAC2.2
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.004G049300 [exp]	6.00	0.8918
AT4G13440			Calcium-binding EF-hand family...		Potri.010G191400 [exp]	10.95	0.8876
AT3G26590			MATE efflux family protein (.1...		Potri.008G187100 [exp]	11.61	0.8869
AT4G03000			RING/U-box superfamily protein...		Potri.008G198300 [exp]	13.49	0.8255
AT5G16800			Acyl-CoA N-acyltransferases (N...		Potri.019G050700 [exp]	13.78	0.8901

Compare expression of checked genes

Potri.016G047500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.