Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15010 181 / 1e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G56860 180 / 1e-52 UBA2A UBP1-associated protein 2A (.1.2.3.4.5) AT2G41060 177 / 1e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G22090 112 / 6e-28 UBA1A RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 105 / 2e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G19380 102 / 1e-23 RNA recognition motif (RRM)-containing protein (.1) AT4G24770 96 / 4e-22 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT3G13224 92 / 1e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 91 / 3e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G40490 91 / 3e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G190900 [exp] 460 / 9e-164 AT3G15010 179 / 6e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G065200 [exp] 197 / 4e-60 AT3G15010 295 / 1e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G055400 [exp] 196 / 2e-59 AT3G15010 303 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G377400 [exp] 181 / 3e-53 AT3G15010 342 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.005G081600 [exp] 177 / 3e-52 AT2G41060 213 / 8e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G025600 [exp] 178 / 1e-51 AT3G56860 353 / 2e-117 UBP1-associated protein 2A (.1.2.3.4.5) Potri.001G220600 [exp] 178 / 1e-51 AT3G56860 232 / 1e-70 UBP1-associated protein 2A (.1.2.3.4.5) Potri.016G023800 [exp] 170 / 1e-48 AT3G56860 348 / 1e-115 UBP1-associated protein 2A (.1.2.3.4.5) Potri.016G090700 [exp] 95 / 3e-22 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023817 [exp] 413 / 1e-144 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021035 [exp] 396 / 4e-134 AT3G15010 182 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032516 [exp] 184 / 1e-54 AT3G56860 405 / 6e-139 UBP1-associated protein 2A (.1.2.3.4.5) Lus10043016 [exp] 181 / 7e-53 AT3G56860 463 / 1e-160 UBP1-associated protein 2A (.1.2.3.4.5) Lus10025418 [exp] 176 / 1e-51 AT3G15010 336 / 8e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10015290 [exp] 170 / 2e-49 AT3G15010 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 100 / 3e-23 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 97 / 4e-22 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 95 / 3e-21 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 95 / 3e-21 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.016G048100.1 pacid=42809908 polypeptide=Potri.016G048100.1.p locus=Potri.016G048100 ID=Potri.016G048100.1.v4.1 annot-version=v4.1 ATGGAAGACATGAAGAAGAGAAAGATGGACGAGGGAAGTAACAATGGTTCTGGCGAAACATCAACCACACAAGATTACCTTCGTTCACTACTTGACCCTC TTAATAAATCCCAGCTTGTCGATCTTCTTTCTAGACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATTAAAGGTCTTGCCAGTGCAGATCCTGTCCA TCGAAAGCTTTTTGTCCGTGGCTTGGCCTGGAACACCACCTCAGAAACCTTGTGTGCTGCATTTCAAATGCATGGCGAGATAGAAGAAGGAGCTGTGATC TATGACAAAGCGACAGGAAAGTCACGTGGCTATGGTTTCATTACATACAAGCATATGGAATCAGCACAAAGTGCACTAGGAGCACCCAGCAGATTGATTG ATAGTCGGATGGCTGTCTGCAATCTAGCTTGTGAGGGATTAACTGGTGCAAGCACTACACCTGATCTAGCCCAGAGGAAACTCTACGTTGGGGGTTTGTC GCCAGAGATCTCAAGTGAGATGCTGCTTAATTTTTTTGGAAGATATGGGGATATTGAGGAAGGCTCAGTTGCGTATGACAAAGATACTAATGAATCACGT GGGTTTGGTTTTGTTACATACAAGACAGTGGAGGTTGCAAAGAAGGCCATAGATGATCCACACAAGTTGTTTGGGGGAAGAACAATCATTGTGAAGCTTG CTGATACCCACAGGAGCAAAACAGTACAAACGCATTTACCAGCACCCATGGTTCCCCTACAAGTACCAATGGGAGCAGGTGGATATGCACAGCCAGGTAA AGCACCCGCTGGCGGTGGTGCCCCTGTTGGTTATCCTTATCCTCAAACTGTAGCTCCATATCCAGCTTCTTCATACCCTAATCCTCCAGTTGCACCTGCT CCATACCCAACACAAACTCAGATTTCTTATGCACAAGTTCCATCGAAGAAAGAACCATTAGGGCATTCACCAGCACCACCTGTCGGAATGGGTGGCTACC CCCCCTATTACTACCCTAAACAGTGA
AA sequence Show only first row Show all	>Potri.016G048100.1 pacid=42809908 polypeptide=Potri.016G048100.1.p locus=Potri.016G048100 ID=Potri.016G048100.1.v4.1 annot-version=v4.1 MEDMKKRKMDEGSNNGSGETSTTQDYLRSLLDPLNKSQLVDLLSRLGSQYPSIAEEIKGLASADPVHRKLFVRGLAWNTTSETLCAAFQMHGEIEEGAVI YDKATGKSRGYGFITYKHMESAQSALGAPSRLIDSRMAVCNLACEGLTGASTTPDLAQRKLYVGGLSPEISSEMLLNFFGRYGDIEEGSVAYDKDTNESR GFGFVTYKTVEVAKKAIDDPHKLFGGRTIIVKLADTHRSKTVQTHLPAPMVPLQVPMGAGGYAQPGKAPAGGGAPVGYPYPQTVAPYPASSYPNPPVAPA PYPTQTQISYAQVPSKKEPLGHSPAPPVGMGGYPPYYYPKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.016G048100 [exp]	0	1
AT3G10950			Zinc-binding ribosomal protein...		Potri.003G085100 [exp]	2.00	0.8404
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Potri.012G108600 [exp]	6.92	0.7836
AT1G71730			unknown protein		Potri.002G063100 [exp]	7.34	0.8211
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Potri.011G089000 [exp]	7.48	0.7964
AT2G15000			unknown protein		Potri.009G093400 [exp]	9.94	0.8109
AT5G02740			Ribosomal protein S24e family ...		Potri.006G215800 [exp]	11.40	0.7797
AT3G11050		ATFER2	ferritin 2 (.1)		Potri.010G184500 [exp]	11.66	0.7501	Pt-PFE2.1
					Potri.001G340100 [exp]	13.41	0.7816
AT5G39600			unknown protein		Potri.004G228566 [exp]	17.49	0.7918
AT3G04610		FLK	flowering locus KH domain, RNA...		Potri.013G043000 [exp]	19.59	0.7396

Compare expression of checked genes

Potri.016G048100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.