Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06810 501 / 2e-165 Mitochondrial transcription termination factor family protein (.1) AT4G19650 394 / 8e-131 Mitochondrial transcription termination factor family protein (.1) AT5G45113 295 / 3e-94 mitochondrial transcription termination factor-related / mTERF-related (.1) AT3G60400 177 / 1e-48 Mitochondrial transcription termination factor family protein (.1) AT1G74120 61 / 9e-10 Mitochondrial transcription termination factor family protein (.1) AT1G61980 58 / 8e-09 Mitochondrial transcription termination factor family protein (.1) AT2G44020 57 / 2e-08 Mitochondrial transcription termination factor family protein (.1) AT1G62150 57 / 3e-08 Mitochondrial transcription termination factor family protein (.1) AT4G38160 52 / 7e-07 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT1G61970 52 / 8e-07 Mitochondrial transcription termination factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G048300 [exp] 722 / 0 AT5G06810 485 / 2e-159 Mitochondrial transcription termination factor family protein (.1) Potri.016G048400 [exp] 694 / 0 AT5G06810 483 / 9e-159 Mitochondrial transcription termination factor family protein (.1) Potri.012G118200 [exp] 445 / 2e-150 AT4G19650 549 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G044900 [exp] 173 / 4e-47 AT3G60400 598 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.015G115701 [exp] 109 / 6e-28 AT4G19650 139 / 2e-39 Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 62 / 4e-10 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.013G116700 [exp] 57 / 2e-08 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.015G005200 [exp] 56 / 4e-08 AT5G54180 493 / 3e-171 plastid transcriptionally active 15 (.1) Potri.009G170300 [exp] 54 / 1e-07 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012021 [exp] 513 / 3e-177 AT5G06810 437 / 5e-141 Mitochondrial transcription termination factor family protein (.1) Lus10039774 [exp] 498 / 9e-172 AT5G06810 398 / 5e-127 Mitochondrial transcription termination factor family protein (.1) Lus10038336 [exp] 355 / 1e-115 AT4G19650 475 / 2e-162 Mitochondrial transcription termination factor family protein (.1) Lus10018548 [exp] 318 / 1e-102 AT5G06810 271 / 5e-81 Mitochondrial transcription termination factor family protein (.1) Lus10013142 [exp] 159 / 8e-42 AT3G60400 559 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10004614 [exp] 59 / 6e-09 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10004534 [exp] 49 / 8e-06 AT2G44020 477 / 7e-168 Mitochondrial transcription termination factor family protein (.1) Lus10014877 [exp] 48 / 2e-05 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10013854 [exp] 47 / 2e-05 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10028912 [exp] 47 / 4e-05 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.016G048200.3 pacid=42810088 polypeptide=Potri.016G048200.3.p locus=Potri.016G048200 ID=Potri.016G048200.3.v4.1 annot-version=v4.1 ATGAACCATTTGCACAAACTCCAAATTTTGAAAAGGGTTTCTCCCAATTTTTTTGGTAGATGCAGAAACCCAATATGGCAAGTGGGTTCTTTGTGCTACA TTGTAGAAAACCCTAGGTTCTATGGGACAAAAACAACGGTTCAAACTGAGAATTTGGATAGAAATTTGATAGGTAATGATCAAAGCATTAGCAAAATCTC TGATGCAGCTAGAAGGGAAGCCCAGGCTTCAACTGCATTACTGGAGTATTTGCACTCCACTAGAACTTTTCAGTTTTTGGATGCCGAGCATATGAGCAAA TACTCACCTGTTTTTGTTAAAAACCTACTAAAGAAGGTTAATATTGATGCAGATATTAGGCGGTCCATTACCCGTTACTTGCGTTACCACCCGATTAATG AATTTGAGATTTTCTTTGAGAGTATGGGTTTAAAACCTCAAGAGTATAGTTCTCTTCTTCCACGTGATCTGATGTATTTGAGTGATGATGATTTGCTGCT TGAGAATTATCATGTGATGTGTAATTATGGGATTGCGAGAAATAAGATGGGAAAGATTTATAAGGAAGCAACAGAAGTTTTTCGATATGATTATGGGGTC CTGGCATTGAAACTCAAAGCTTATGAGAAGCTGGGGCTTAGCTCTTCTTTTATAGCGAAGGTGGTTGTCCGTAGCCCTGATCTTTTGATTGGAGATGCGA ACATTGACTTTATCAAGATATTGGAGTTATTGAGGAAAGGGGGACTTGAGTACCGTAGAATTGAGAAGCTTTTGTCGGATAAGAGCACTTACAACTGGAG CCAGTTGCTTTCACTTCTAAACTTATTTGGCAAGGCAGGTTACAATGATGAGCAGTTAAGTGAGCTGATAAGCCAAAAGCCATGGATTCTGCGTGAGGAT TCAGTGGATAGGGCTCTTTTGCTAATCGGGTTCCTGCTTAAATTTGGATCCACGATGAACCAGATATGTTCCTTGTTTCTGCAGTTTCCCAAGGTACAGG TTGAGAAATTTGCCTCAAATTTGAGGCATTGCTTTCTGTTCTTGAATGAGATCAATATGGAGGCATATGAGATTGGGAAGCTTTTTCGTTCTCACCCTAT ATTTATAGGTTCATTTACGTTGAAGAAAACCAACAGTTTGCTTTCCCGTCTGAATGCTGGGAAGAAGCGAATTTGTGAAGTCATCCAGGAGAATCCAGAA ATTATGAAGAAATGGGTGAAGGGATCAAAAATTGAATGGTTACCAGACTCGGGTGAGGAACTAAGATCTCAAATGCTGAAGACTAAGTTCTTCTTAGACT TGGGATTTGTAGAGAACTCAGATGAAATGAAAAGAGCACTTAAGGTTTTCCGGGGCAGAGGAGCAGAGCTTCAAGAGAGATTTGATTGTCTTGTGATAGC TGGTTTGGATAGAAAGGATGTTTGTGAAATGATAAAAGTATCCCCTCAAATTCTTAATCAGAAAAAGGAAGTTATTGAAATGAAGATTGATTTTCTCATA AATGATTTGGGTTTTCCCATATCATCTTTGGTCAGATTCCCTTCCTATCTCTCTTACACAATGCAAAGAGCTAAGCTTAGGTTAACAATGTATAATTGGC TCAAAGAGCAGGGAAAAGTTAATCCTATGCTTTCCTTCAGCACTATAGTTGGTTGCACAGATAATGTGTTCCTTAGTCAGTATGTAGATCGTCATCCTAG AGGCCCAGAAATTTGGGAGGATTTAAAGAAAGAAATTTGTTCTGCATAG
AA sequence Show only first row Show all	>Potri.016G048200.3 pacid=42810088 polypeptide=Potri.016G048200.3.p locus=Potri.016G048200 ID=Potri.016G048200.3.v4.1 annot-version=v4.1 MNHLHKLQILKRVSPNFFGRCRNPIWQVGSLCYIVENPRFYGTKTTVQTENLDRNLIGNDQSISKISDAARREAQASTALLEYLHSTRTFQFLDAEHMSK YSPVFVKNLLKKVNIDADIRRSITRYLRYHPINEFEIFFESMGLKPQEYSSLLPRDLMYLSDDDLLLENYHVMCNYGIARNKMGKIYKEATEVFRYDYGV LALKLKAYEKLGLSSSFIAKVVVRSPDLLIGDANIDFIKILELLRKGGLEYRRIEKLLSDKSTYNWSQLLSLLNLFGKAGYNDEQLSELISQKPWILRED SVDRALLLIGFLLKFGSTMNQICSLFLQFPKVQVEKFASNLRHCFLFLNEINMEAYEIGKLFRSHPIFIGSFTLKKTNSLLSRLNAGKKRICEVIQENPE IMKKWVKGSKIEWLPDSGEELRSQMLKTKFFLDLGFVENSDEMKRALKVFRGRGAELQERFDCLVIAGLDRKDVCEMIKVSPQILNQKKEVIEMKIDFLI NDLGFPISSLVRFPSYLSYTMQRAKLRLTMYNWLKEQGKVNPMLSFSTIVGCTDNVFLSQYVDRHPRGPEIWEDLKKEICSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06810			Mitochondrial transcription te...		Potri.016G048200 [exp]	0	1
AT4G20020			unknown protein		Potri.004G218650 [exp]	2.44	0.8727
AT5G64320			Pentatricopeptide repeat (PPR)...		Potri.013G002800 [exp]	4.24	0.8453
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.015G139300 [exp]	5.56	0.8027
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Potri.014G121500 [exp]	5.91	0.8423	CKI1.5
AT1G13030			sphere organelles protein-rela...		Potri.008G185100 [exp]	6.32	0.8279
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.014G052800 [exp]	6.48	0.8596
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Potri.015G048200 [exp]	9.16	0.8075
AT5G07950			unknown protein		Potri.018G051500 [exp]	9.27	0.7947
AT1G13810			Restriction endonuclease, type...		Potri.008G039800 [exp]	9.79	0.8390
AT3G14470			NB-ARC domain-containing disea...		Potri.018G135700 [exp]	10.24	0.8277

Compare expression of checked genes

Potri.016G048200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.