Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06810 486 / 5e-160 Mitochondrial transcription termination factor family protein (.1) AT4G19650 390 / 2e-129 Mitochondrial transcription termination factor family protein (.1) AT5G45113 280 / 7e-89 mitochondrial transcription termination factor-related / mTERF-related (.1) AT3G60400 174 / 1e-47 Mitochondrial transcription termination factor family protein (.1) AT1G61970 62 / 4e-10 Mitochondrial transcription termination factor family protein (.1.2) AT1G61990 61 / 1e-09 Mitochondrial transcription termination factor family protein (.1) AT1G74120 58 / 8e-09 Mitochondrial transcription termination factor family protein (.1) AT1G62150 57 / 2e-08 Mitochondrial transcription termination factor family protein (.1) AT5G23930 52 / 9e-07 Mitochondrial transcription termination factor family protein (.1) AT5G54180 51 / 1e-06 PTAC15 plastid transcriptionally active 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G048400 [exp] 1025 / 0 AT5G06810 483 / 9e-159 Mitochondrial transcription termination factor family protein (.1) Potri.016G048200 [exp] 723 / 0 AT5G06810 501 / 3e-165 Mitochondrial transcription termination factor family protein (.1) Potri.012G118200 [exp] 455 / 2e-154 AT4G19650 549 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G044900 [exp] 171 / 3e-46 AT3G60400 598 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.015G115701 [exp] 105 / 2e-26 AT4G19650 139 / 2e-39 Mitochondrial transcription termination factor family protein (.1) Potri.015G005200 [exp] 62 / 4e-10 AT5G54180 493 / 3e-171 plastid transcriptionally active 15 (.1) Potri.018G051600 [exp] 60 / 2e-09 AT1G74120 501 / 2e-176 Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 57 / 2e-08 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 53 / 5e-07 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039774 [exp] 498 / 4e-172 AT5G06810 398 / 5e-127 Mitochondrial transcription termination factor family protein (.1) Lus10012021 [exp] 498 / 3e-171 AT5G06810 437 / 5e-141 Mitochondrial transcription termination factor family protein (.1) Lus10038336 [exp] 365 / 8e-120 AT4G19650 475 / 2e-162 Mitochondrial transcription termination factor family protein (.1) Lus10018548 [exp] 300 / 7e-96 AT5G06810 271 / 5e-81 Mitochondrial transcription termination factor family protein (.1) Lus10013142 [exp] 175 / 1e-47 AT3G60400 559 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10004614 [exp] 59 / 9e-09 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10004534 [exp] 55 / 9e-08 AT2G44020 477 / 7e-168 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 53 / 4e-07 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10035714 [exp] 48 / 2e-05 AT1G78930 582 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10014877 [exp] 47 / 2e-05 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.016G048300.1 pacid=42809539 polypeptide=Potri.016G048300.1.p locus=Potri.016G048300 ID=Potri.016G048300.1.v4.1 annot-version=v4.1 ATGACCCACTTTGGCAAATTTAAAATTTTCAAATGGGTTTCATCCAATTTTGTTGGTAGCAACAAAACCCCGTTGTCCTCAATGGTGTCATTATTCAACA TTGCAGAAAACCCTAGGTTCTATAGTACCAAGAGGATAGTTCAAACTGAAAATGGACAAAGCATAAGCCCAGTTTCTAGGACAGAAGCCCAGGCTGCGTT ATTAGAATATCTGCACTTCACTAGAAACATACAGTTTACGGATGCAGAGAATATGAGTAAAAATTCACCTCATTTTCTTGAAAAGTTATTAGCAAAGGTT GATATTGATGCAAATATTGGGCAGTCCATTACCCGTTACTTGTGTTTTCACCCTATTAATGAATTTGAGCCTTTCTTTGAGAGTTTGGGTCTAAAACCTC ATGATTATAATCCTCTTCTTCCACGTGATCTGATGTTTTTATGTGACGATGATTTACTTTTAGAGAATTATCATGTTTTGTGTAATTATGGGATTGCAAG AAGTAAGATAGGAAAGATTTATAAGGAAGCCGCGGAAGTTTTCGGGTATGATTATGGGGTCTTGGTGCTGAAACTAAAAGCTTATGAGGAATTGGGGCTT GGCCAGTCTTTTATGATGAAGTTGGTTGTCTGTAGCCCTTATCTTTTGATTGGAGAGGTGAATGCAGACTTTGTCAAGGTATTAGAGATATTGAGAAAAG AGGGAGTTGATATCAGTAGGATTGAGGAGCATTTGTCTGAGAAGAGTTCTTATGACTGGAGCAAGTTGCTTGCACTGCTCAACTTATTTAGGCATGCAGG TTACAATGAGGAGCAGCTAGGTGGACTCATAAGCCGGCATCTGGGGATTTTCTTTGAGGATTCAGTGGATAGGATATATTTGCTAATTGGTTTCCTCCTC AAATTTGGATCCACGATGAATCAGATATGTTCTATGTTTTTGCAGTTTCCACAAATGGAATTTGAGGAATTCTTTTCAAATTTAAGGCATTGCTTTCTGT TCTTGAAAGAGATCCAGATGGAGGCACATGAGATTCGGAATATTTTCCATTCTCACCCTCTAATGCTTGGTTCATGTAGATTGAAGAAACCTAACACATT GCGTTTAGCCTTACATGCTGCGGATAAGAGAATGTGTGAAGTCATCCAAGAGAGCCCACAAGTTTTGAAGAAATGGGTGATGGGATCAAAAGTTGAACGA TTGCAAAACTTGATACTAAAATCACGGATGCAGAAGACCAAGTTCTTGTTGGACTTGGGAATTGTAGATGACTCAAATGAAATAGGAAAAGCACTTAAGG TTTTCCGGGGCAGTGGAGCAAAGATCCAAGAGAGGTTTGATTGTATTGTGGAAGCTGGTTTGAGCAGAAAAGATGTTTGTGAAATGATAAAAGCATCTCC TCAAATTCTTAACCAAACGAAAGATGTTCTTGAAATGAAGATTGATTTTCTTGTAAATAAGGTGGGTTATCCAGTATCATATTTGGTCACTTTCCCATCC TATCTTAATTACACAATGGAAAGAGTGGAGCTTAGGTTAGCAATGTATAATTGGCTCAGGGATCAAGGAAAATCTGTGCCCATGCTTTCCTTGAGCACTG TAATTTCTCTCTCAGATAAAAAGTTCATTAATGAGTATGTAAATAGTCATCGTAGAGGCCCTGAAATTTGGCAGAATTTGAAGAAAGAAATTTATGCTGA ATAA
AA sequence Show only first row Show all	>Potri.016G048300.1 pacid=42809539 polypeptide=Potri.016G048300.1.p locus=Potri.016G048300 ID=Potri.016G048300.1.v4.1 annot-version=v4.1 MTHFGKFKIFKWVSSNFVGSNKTPLSSMVSLFNIAENPRFYSTKRIVQTENGQSISPVSRTEAQAALLEYLHFTRNIQFTDAENMSKNSPHFLEKLLAKV DIDANIGQSITRYLCFHPINEFEPFFESLGLKPHDYNPLLPRDLMFLCDDDLLLENYHVLCNYGIARSKIGKIYKEAAEVFGYDYGVLVLKLKAYEELGL GQSFMMKLVVCSPYLLIGEVNADFVKVLEILRKEGVDISRIEEHLSEKSSYDWSKLLALLNLFRHAGYNEEQLGGLISRHLGIFFEDSVDRIYLLIGFLL KFGSTMNQICSMFLQFPQMEFEEFFSNLRHCFLFLKEIQMEAHEIRNIFHSHPLMLGSCRLKKPNTLRLALHAADKRMCEVIQESPQVLKKWVMGSKVER LQNLILKSRMQKTKFLLDLGIVDDSNEIGKALKVFRGSGAKIQERFDCIVEAGLSRKDVCEMIKASPQILNQTKDVLEMKIDFLVNKVGYPVSYLVTFPS YLNYTMERVELRLAMYNWLRDQGKSVPMLSLSTVISLSDKKFINEYVNSHRRGPEIWQNLKKEIYAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06810			Mitochondrial transcription te...		Potri.016G048300 [exp]	0	1
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.015G034900 [exp]	1.00	0.8396
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Potri.016G095900 [exp]	2.00	0.8214
AT1G77250			RING/FYVE/PHD-type zinc finger...		Potri.002G076900 [exp]	2.00	0.8349
AT1G21740			Protein of unknown function (D...		Potri.005G070200 [exp]	3.87	0.8344
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.006G252400 [exp]	10.58	0.8073
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.008G048900 [exp]	12.32	0.7747
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Potri.014G016100 [exp]	14.69	0.7983
					Potri.013G037900 [exp]	14.83	0.7858
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.001G170200 [exp]	15.29	0.8098
AT5G54260		MRE11, ATMRE11	ARABIDOPSIS MEIOTIC RECOMBINAT...		Potri.001G407300 [exp]	16.61	0.7836	Pt-MRE11.1

Compare expression of checked genes

Potri.016G048300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.