Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42200 217 / 3e-67 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT3G57920 191 / 1e-57 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT5G43270 133 / 5e-35 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT1G27370 132 / 1e-34 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT1G69170 130 / 7e-34 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G27360 129 / 7e-34 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT2G33810 122 / 9e-34 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G02065 126 / 3e-33 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT3G15270 122 / 5e-33 SBP SPL5 squamosa promoter binding protein-like 5 (.1) AT2G47070 127 / 1e-31 SBP SPL1 squamosa promoter binding protein-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G172600 [exp] 147 / 9e-40 AT5G43270 237 / 3e-73 squamosa promoter binding protein-like 2 (.1.2.3) Potri.018G149900 [exp] 145 / 5e-39 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.001G055900 [exp] 141 / 8e-38 AT5G43270 233 / 3e-72 squamosa promoter binding protein-like 2 (.1.2.3) Potri.001G398200 [exp] 130 / 3e-36 AT1G53160 162 / 6e-51 squamosa promoter binding protein-like 4 (.1.2) Potri.002G142400 [exp] 135 / 8e-36 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4) Potri.014G057800 [exp] 134 / 3e-35 AT1G27370 137 / 3e-36 squamosa promoter binding protein-like 10 (.1.2.3.4) Potri.011G116800 [exp] 129 / 7e-35 AT3G15270 159 / 5e-49 squamosa promoter binding protein-like 5 (.1) Potri.014G057700 [exp] 129 / 5e-34 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.015G060400 [exp] 131 / 1e-33 AT1G69170 153 / 4e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021034 [exp] 284 / 4e-93 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10023818 [exp] 283 / 8e-93 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10016275 [exp] 225 / 4e-71 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10012020 [exp] 229 / 1e-70 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1) Lus10011356 [exp] 136 / 4e-36 AT5G43270 211 / 4e-64 squamosa promoter binding protein-like 2 (.1.2.3) Lus10006411 [exp] 133 / 5e-35 AT5G43270 204 / 1e-61 squamosa promoter binding protein-like 2 (.1.2.3) Lus10021614 [exp] 132 / 1e-34 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10021141 [exp] 132 / 3e-34 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10028181 [exp] 129 / 4e-34 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10036812 [exp] 127 / 9e-33 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.016G048500.1 pacid=42810194 polypeptide=Potri.016G048500.1.p locus=Potri.016G048500 ID=Potri.016G048500.1.v4.1 annot-version=v4.1 ATGAACTCTAGGCATTTACTAATGGAAATGGATTCAGGCTCCCTAACCGAGTCAGCTACTTCCAATGCAACTTCTCCGCCAGCTGAGTCTGTTAATGGAT TGAAATTTGGTAAGAAGATTTACTTTGAGGATCACGTGGGGGTCGGTGCTCCGGCTAAGAGCGGAACTGGGTCATCCTCATCCGGTTCCGGGTCAGGGTC ATCTAGGAAGGCTCAGGGTGGACAGCACCAGCAGCCACCAAGGTGTCAAGTTGAAGGGTGCAAAGTAGATCTGAGTGATGCTAAGACTTACTATTCAAGG CACAAAGTTTGTAGTATGCACTCCAAGTCTCCTAGAGTTATTGTTGCTGGTTTGGTGCAAAGATTTTGCCAGCAATGTAGCAGATTTCATCTACTTCCTG AATTTGACCAAGGAAAACGAAGTTGCCGCAGGCGCCTAGCTGGCCATAATGAGCGACGGAGGAAGCCACCATCTGGATCGGTGTTGTCCGCTCGCCATGG CCGATTCTCTCCCTCTTTGTTTGATAATAGCAGCAGAGCTGGAGGCCTTCTTGTGGACTTTAGTGCATATCCAAGGCATACTGGGAGAGATGGATGGCCT GCAGCAAGGTCTTCTGAGCTTACCCCCGGGAATGATACTGCTGCCACAGGAAGGTCTATATCTCATATGTGGCAGATAAGCTCCCAGAATCCTCCATCCA ACCTTTGCTTGCAAGGCTCAACTGGCGGGACTGGCCTTTTCAGTTCAGGAATTCCTCCGGGAGAATGCTTCACAGGAGTTGCTGTTTCAGACTCGAGCTG TGCTCTCTCTCTTCTGTCAAATCAACCATGGGGCTCCACAAACCGAGCATCAAGTCTTGCGGTGAATGACTTGTTTAGTGCCGAAGAGGCACCCGTGGTT CAATCAACAGCTCACCATGGTGCGGCTGTCAATCAGTATCCAATCCCTTGGAGCTTCAAGAGCAATGAAGGAAGTAACAGTTCACATGAGATGTGCCCTG ATCTAGGTCTGGGTCAAATTTCAATGCCTCTCAACAGTCAACTTGCTGGTCAGCTCGAGCAGTCTCAACAGAATAGGAGGCAATACATGGACCTCGAGCA TTCCAGGGCTTATGACTCTTCAACCCAGCACATCCACTGGTCACTTTAA
AA sequence Show only first row Show all	>Potri.016G048500.1 pacid=42810194 polypeptide=Potri.016G048500.1.p locus=Potri.016G048500 ID=Potri.016G048500.1.v4.1 annot-version=v4.1 MNSRHLLMEMDSGSLTESATSNATSPPAESVNGLKFGKKIYFEDHVGVGAPAKSGTGSSSSGSGSGSSRKAQGGQHQQPPRCQVEGCKVDLSDAKTYYSR HKVCSMHSKSPRVIVAGLVQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRKPPSGSVLSARHGRFSPSLFDNSSRAGGLLVDFSAYPRHTGRDGWP AARSSELTPGNDTAATGRSISHMWQISSQNPPSNLCLQGSTGGTGLFSSGIPPGECFTGVAVSDSSCALSLLSNQPWGSTNRASSLAVNDLFSAEEAPVV QSTAHHGAAVNQYPIPWSFKSNEGSNSSHEMCPDLGLGQISMPLNSQLAGQLEQSQQNRRQYMDLEHSRAYDSSTQHIHWSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Potri.016G048500 [exp]	0	1
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Potri.007G017100 [exp]	8.48	0.6865	Pt-ALDH3.2
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Potri.016G082700 [exp]	18.70	0.7266
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.001G058600 [exp]	29.84	0.7237
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Potri.002G108000 [exp]	33.70	0.6405	Pt-IAA8.4
AT1G60060			Serine/threonine-protein kinas...		Potri.010G096400 [exp]	34.27	0.7179
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Potri.018G149900 [exp]	34.98	0.6062
AT1G59940		ARR3	response regulator 3 (.1)		Potri.010G037800 [exp]	48.57	0.5702
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.007G102100 [exp]	53.85	0.6474
AT2G44065			Ribosomal protein L2 family (....		Potri.017G007700 [exp]	74.93	0.6049
AT3G11210			SGNH hydrolase-type esterase s...		Potri.010G189300 [exp]	83.46	0.6159

Compare expression of checked genes

Potri.016G048500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.