Plant FIBer expression Database

Potri.016G048600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57910 215 / 1e-69 D111/G-patch domain-containing protein (.1)
AT5G26610 47 / 4e-06 D111/G-patch domain-containing protein (.1.2.3)
AT3G54230 44 / 6e-05 SUA suppressor of abi3-5 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G002700
[exp]
47 / 4e-06 AT5G26610 294 / 1e-99 D111/G-patch domain-containing protein (.1.2.3)
Potri.013G002100
[exp]
47 / 7e-06 AT5G26610 289 / 1e-97 D111/G-patch domain-containing protein (.1.2.3)
Potri.008G003100
[exp]
45 / 7e-06 AT5G08535 107 / 5e-31 D111/G-patch domain-containing protein (.1.2)
Potri.004G081800
[exp]
45 / 3e-05 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021033
[exp]
235 / 6e-77 AT3G57910 269 / 4e-90 D111/G-patch domain-containing protein (.1)
Lus10023819
[exp]
231 / 4e-75 AT3G57910 273 / 1e-91 D111/G-patch domain-containing protein (.1)
Lus10031446
[exp]
48 / 2e-06 AT5G26610 357 / 1e-124 D111/G-patch domain-containing protein (.1.2.3)
Lus10001513
[exp]
46 / 1e-05 AT5G26610 356 / 6e-124 D111/G-patch domain-containing protein (.1.2.3)
Lus10010955
[exp]
45 / 6e-05 AT3G54230 943 / 0.0 suppressor of abi3-5 (.1.2)
Lus10031369
[exp]
44 / 0.0001 AT3G54230 812 / 0.0 suppressor of abi3-5 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0449 G-PATCH PF01585 G-patch G-patch domain
CL0449 PF13821 DUF4187 Domain of unknown function (DUF4187)
Representative CDS sequence
>Potri.016G048600.2 pacid=42810001 polypeptide=Potri.016G048600.2.p locus=Potri.016G048600 ID=Potri.016G048600.2.v4.1 annot-version=v4.1
ATGGCAGAATCAACAGAGAAGCAAAGAGACAGTGAACCAAAACAGCATGAAGAAGCAGATGGAGACGATTACATGGGAGACCTGTCTCAGTTTCTTCCTC
CTGAAACAACAAACCCTTCAAAATCCTCTGCCAAAAAGACCGTCAACAAGGAAACACCAACTTTTCAATCATTCAATAAGAAGTCCAAAAACATTAGCTG
GCAAGAACAACGAAGACTTGAAAGGGAGAAAAAGCAACAAGAGGAGGATGAGCAAACCATGGCAAGAATAGAAGCTCCAATTCCTCCATCTAACATTGGG
TTTAAGTTGTTAAAGCAAATGGGTTACACCCCTGGTTCAGCCCTTGGTAAGGAGGGTTCAGGAAGAGCTGAGCCAGTGGGGATTCAGATTCGGCGGACAC
GAGTAGGGATTGGAAGAGAGGAACCGCATAAGGAGAAGAGGAAGAGAGAAGAGATTGAGGCAGAAAGGAACAGAATGAAGGAGAGCGAGTTAATGGAAGA
GTTTGGGTCAAGGCAAAAGTCTCAATGGCGAAGTCGGAGAGTTGTAGTAAATTTTATGAAAGCAAAAGCAGCTCTTGATCAATTGGAGAACAAAGAAGTT
GTGGAACCAAAGAAGAATGAAGATGAAGAGGATGGTGAACAGGATGAGGAGGAAGAGGAAGAGATAACAGAAGAGGATTTGCAAGAACTGTTGATGAAAC
TGAGAGATGAATATCAATACTGCCCGTTTTGTGGCTTTCAGTACGAAACAGTGGAAGCCCTCCAATCCAACTGCCCTGGAATAAACGAAGACGACCACTA
G
AA sequence
>Potri.016G048600.2 pacid=42810001 polypeptide=Potri.016G048600.2.p locus=Potri.016G048600 ID=Potri.016G048600.2.v4.1 annot-version=v4.1
MAESTEKQRDSEPKQHEEADGDDYMGDLSQFLPPETTNPSKSSAKKTVNKETPTFQSFNKKSKNISWQEQRRLEREKKQQEEDEQTMARIEAPIPPSNIG
FKLLKQMGYTPGSALGKEGSGRAEPVGIQIRRTRVGIGREEPHKEKRKREEIEAERNRMKESELMEEFGSRQKSQWRSRRVVVNFMKAKAALDQLENKEV
VEPKKNEDEEDGEQDEEEEEEITEEDLQELLMKLRDEYQYCPFCGFQYETVEALQSNCPGINEDDH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G57910 D111/G-patch domain-containing... Potri.016G048600
[exp]
0 1
AT2G18350 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, hom... Potri.005G122500
[exp]
2.23 0.7590
AT5G03780 TRFL10 TRF-like 10 (.1) Potri.002G005600
[exp]
4.79 0.7882
AT5G57250 Pentatricopeptide repeat (PPR)... Potri.018G143800
[exp]
5.74 0.7808 CYP71.3
AT1G03080 kinase interacting (KIP1-like)... Potri.002G049600
[exp]
8.48 0.7477
AT1G09195 unknown protein Potri.005G020100
[exp]
8.94 0.7490
AT2G24960 unknown protein Potri.013G025200
[exp]
9.16 0.7492
Potri.003G196200
[exp]
11.53 0.7256
AT1G65440 GTB1 global transcription factor gr... Potri.016G029200
[exp]
12.00 0.7832
AT5G62000 ARF ORE14, HSS, ARF... ORESARA 14, HLS1 SUPPRESSOR, A... Potri.001G066200
[exp]
12.00 0.7208
AT5G62190 PRH75 DEAD box RNA helicase (PRH75) ... Potri.012G131000
[exp]
12.00 0.7388 Pt-PRH75.1

Potri.016G048600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.