Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50690 284 / 2e-95 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 284 / 2e-95 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT3G47350 278 / 1e-92 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT5G50700 275 / 5e-91 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 275 / 5e-91 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT3G47360 271 / 2e-90 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT5G50770 252 / 2e-82 ATHSD6 hydroxysteroid dehydrogenase 6 (.1) AT4G10020 211 / 6e-66 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT3G03330 86 / 4e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10050 84 / 2e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G048900 [exp] 366 / 3e-127 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.015G100000 [exp] 332 / 5e-114 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 327 / 6e-112 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.012G101900 [exp] 323 / 1e-110 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.012G102000 [exp] 308 / 9e-105 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.013G100200 [exp] 226 / 4e-72 AT4G10020 506 / 0.0 hydroxysteroid dehydrogenase 5 (.1) Potri.019G073200 [exp] 223 / 1e-70 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.008G149201 [exp] 90 / 1e-20 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G086600 [exp] 80 / 8e-17 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022442 [exp] 285 / 2e-95 AT3G47350 282 / 1e-94 hydroxysteroid dehydrogenase 2 (.1.2) Lus10022441 [exp] 276 / 6e-92 AT5G50770 349 / 3e-120 hydroxysteroid dehydrogenase 6 (.1) Lus10016748 [exp] 278 / 1e-90 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1) Lus10032556 [exp] 272 / 6e-90 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1) Lus10001511 [exp] 266 / 2e-87 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10043187 [exp] 263 / 1e-86 AT5G50600 404 / 4e-141 hydroxysteroid dehydrogenase 1 (.1) Lus10031448 [exp] 256 / 1e-83 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10001280 [exp] 209 / 6e-65 AT4G10020 495 / 5e-176 hydroxysteroid dehydrogenase 5 (.1) Lus10006178 [exp] 207 / 1e-64 AT4G10020 485 / 8e-173 hydroxysteroid dehydrogenase 5 (.1) Lus10041045 [exp] 207 / 3e-64 AT4G10020 506 / 3e-180 hydroxysteroid dehydrogenase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.016G048800.1 pacid=42810579 polypeptide=Potri.016G048800.1.p locus=Potri.016G048800 ID=Potri.016G048800.1.v4.1 annot-version=v4.1 ATGATGATCTTGATGCACAGAGCGTTGAATATTGTGTTTCCTCTTGCGATACTCATTTTACTCCTGATAATTCTACCACCTTATCTTGTGTTCAAGTTGC TGAGCTACATTAAAAGATCCATATTCAGTGAGAATGTGGCCGGAAAAGTTGTTCTCATCACTGGAGCATCTTCTGGCATTGGTGAGGATCTTGCTTACGA ATATGCTGTAAGAGGAGCTAGATTGGCCCTTGTTGCAAGAAGAGAAGACCGTCTTAGAGCAGTTGCTGATAAAGCCCGTAATCTGGGTTCGCCAGATGTT TTTCAGGTCCGTGCGGACATTTCTAAGGTTGAAGACTGCAGACGAATCATTGATGAGACGTTGAACCACTTTGGCCAACTTGATCATTTGGTTAATAACG CTGGGATTTCTCAAGCTGCGTATTTCGAAGATTGCACTGAAGTCTCTGATTTGACTCATATTATGGATGTAAATTTCTGGGGCTCAACATTTTGCTCGCG TTTTGCTATTCCACATCTAAAGAGAAGCAAAGGGAAAATTGTTGTGATATCATCGATAGCTCCTTGGTCTCTAACACCAAAATTAAGCGTCTACAATGCA AGTAAGGCGGCTTTAATAAGCTTTTATGGCACCTTGAGGCTTGAGATCGGTTCGCATATTGGTATAACAATCGTGATGCCTGGGTTGATCGATACAGAAA TGACCTCACCTTCTTCGCTAGCCAAGTATTCTGTCAAGTATTGTCCACCAAATGAGCCGGCAAATCAATGTGCTAAGGCAATTGTGAAGAGCACCTGCCG TGGCGACAGATACTTGACCGAGCCATCTTGGTGGAACGCTTTGTTTATGTTCAAATCGTTATGTCCAGAAGCATTGGATTTGATTTTGTGCTGGGCTTTT ATGGTTAATGGAGCACAAAAGGAAAGACGAATATAA
AA sequence Show only first row Show all	>Potri.016G048800.1 pacid=42810579 polypeptide=Potri.016G048800.1.p locus=Potri.016G048800 ID=Potri.016G048800.1.v4.1 annot-version=v4.1 MMILMHRALNIVFPLAILILLLIILPPYLVFKLLSYIKRSIFSENVAGKVVLITGASSGIGEDLAYEYAVRGARLALVARREDRLRAVADKARNLGSPDV FQVRADISKVEDCRRIIDETLNHFGQLDHLVNNAGISQAAYFEDCTEVSDLTHIMDVNFWGSTFCSRFAIPHLKRSKGKIVVISSIAPWSLTPKLSVYNA SKAALISFYGTLRLEIGSHIGITIVMPGLIDTEMTSPSSLAKYSVKYCPPNEPANQCAKAIVKSTCRGDRYLTEPSWWNALFMFKSLCPEALDLILCWAF MVNGAQKERRI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50690		ATHSD7	hydroxysteroid dehydrogenase 7...		Potri.016G048800 [exp]	0	1
AT4G34090			unknown protein		Potri.001G304401 [exp]	7.21	0.8418
AT1G77060			Phosphoenolpyruvate carboxylas...		Potri.002G073600 [exp]	8.48	0.8280
AT5G45480			Protein of unknown function (D...		Potri.006G013400 [exp]	14.24	0.8320
AT1G52950			Nucleic acid-binding, OB-fold-...		Potri.003G004401 [exp]	31.46	0.7929
AT5G02930			F-box/RNI-like superfamily pro...		Potri.005G252701 [exp]	40.98	0.8303
					Potri.001G260304 [exp]	57.23	0.8138
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Potri.003G169600 [exp]	101.82	0.7972
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G133901 [exp]	161.56	0.7851

Compare expression of checked genes

Potri.016G048800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.