Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50700 275 / 6e-91 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 275 / 6e-91 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50690 273 / 8e-91 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 273 / 8e-91 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT3G47360 265 / 2e-87 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT3G47350 258 / 1e-84 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT5G50770 251 / 2e-81 ATHSD6 hydroxysteroid dehydrogenase 6 (.1) AT4G10020 186 / 6e-56 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT3G03330 79 / 1e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 76 / 1e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G048800 [exp] 366 / 4e-127 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.015G100000 [exp] 321 / 1e-109 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.012G101900 [exp] 318 / 3e-108 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 316 / 1e-107 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.012G102000 [exp] 296 / 1e-99 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.013G100200 [exp] 197 / 1e-60 AT4G10020 506 / 0.0 hydroxysteroid dehydrogenase 5 (.1) Potri.019G073200 [exp] 192 / 2e-58 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.010G056100 [exp] 78 / 3e-16 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 78 / 5e-16 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001511 [exp] 282 / 1e-93 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10032556 [exp] 281 / 2e-93 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1) Lus10016748 [exp] 285 / 9e-93 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1) Lus10031448 [exp] 276 / 4e-91 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10022441 [exp] 275 / 6e-91 AT5G50770 349 / 3e-120 hydroxysteroid dehydrogenase 6 (.1) Lus10043187 [exp] 271 / 2e-89 AT5G50600 404 / 4e-141 hydroxysteroid dehydrogenase 1 (.1) Lus10022442 [exp] 262 / 3e-86 AT3G47350 282 / 1e-94 hydroxysteroid dehydrogenase 2 (.1.2) Lus10001280 [exp] 172 / 3e-50 AT4G10020 495 / 5e-176 hydroxysteroid dehydrogenase 5 (.1) Lus10009467 [exp] 171 / 4e-50 AT4G10020 501 / 1e-178 hydroxysteroid dehydrogenase 5 (.1) Lus10041045 [exp] 167 / 1e-48 AT4G10020 506 / 3e-180 hydroxysteroid dehydrogenase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.016G048900.2 pacid=42810639 polypeptide=Potri.016G048900.2.p locus=Potri.016G048900 ID=Potri.016G048900.2.v4.1 annot-version=v4.1 ATGGCAACGACTTCGATTCACAGATTGTTGAATATAGTGTTTCCTCTTACGATAATCATTTCAATCCTAGTAATCTTACCGCCATACCTCGTGTTCAAGT TGCTAAGTTACATAAAAAGATCTATGTTCACTGAAAATGTGGCTGGAAAAGTTGTGCTCATCACTGGAGCATCTTCTGGCATTGGTGAGCATCTACTGCT ATATCTGATATTGATAATATTACTATCGTATTGTATGTGGCGAAAAACAAAGGGTCTTGCATACGAGTATGCTAGACGAGGAGCTAGATTAGCCCTTGTT GCAAGAAGAGAAGACCGTCTTAGAGAAGTCGCCGATAAAGCCCATGAGCTGGGTTCACCGGAGGCTTTTGTCATCCGCGCTGATGTTGCCAAGGTTGAAG ATTGCAAACGTATTGTAGATGAGGCAGTGAACCACTTCGGTCAACTGGATCATTTGGTTAGTAACGCCGGGATTTTGCGGGCTGAGTTGTTCGAAAATTG CAAGCTGTCTGATTTCGCTCCTATCTTGGATGTCAATTTCTTGGGGGCAACATATTGCGCTCGCTTTGCTATTCCAGTCCTGAGGAAAAGCAAAGGGAAG ATTGTTGCGATTACATCCGTGGCAGCTTGGTCACCAGCTCCAAGGGCAACCTTCTACAATGCAAGCAAGGCAGCCTTGGTAAGCTTTTTTGAGACACTCA GAGTTGAATGCGATTCCCATATTGGTATAACAATAGTGCTTCCAGGATTGATCGAGTCAGAAATGACTGTGCCTGATTCACTGTCAAAGTTTCAAGCCAA GTTGGTCCCACCGATTGAGTCAACAAGACAATGTGCCGAAGCAATTGTGCACAGCGCTTGCCGTGGCGACATGTACTTGACAGAGCCATCTTGGTCGAAT GCTCTTTTTATGCTCAAGCTGCTATGTCCTGAATTATTTGACTGGTTTTATCGTTGGAATTTTATGAGTGGACCTAAGATTGATCAGCTGTAA
AA sequence Show only first row Show all	>Potri.016G048900.2 pacid=42810639 polypeptide=Potri.016G048900.2.p locus=Potri.016G048900 ID=Potri.016G048900.2.v4.1 annot-version=v4.1 MATTSIHRLLNIVFPLTIIISILVILPPYLVFKLLSYIKRSMFTENVAGKVVLITGASSGIGEHLLLYLILIILLSYCMWRKTKGLAYEYARRGARLALV ARREDRLREVADKAHELGSPEAFVIRADVAKVEDCKRIVDEAVNHFGQLDHLVSNAGILRAELFENCKLSDFAPILDVNFLGATYCARFAIPVLRKSKGK IVAITSVAAWSPAPRATFYNASKAALVSFFETLRVECDSHIGITIVLPGLIESEMTVPDSLSKFQAKLVPPIESTRQCAEAIVHSACRGDMYLTEPSWSN ALFMLKLLCPELFDWFYRWNFMSGPKIDQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50690		ATHSD7	hydroxysteroid dehydrogenase 7...		Potri.016G048900 [exp]	0	1
AT3G15570			Phototropic-responsive NPH3 fa...		Potri.003G058800 [exp]	1.41	0.9848
AT1G52827		ATCDT1	cadmium tolerance 1 (.1)		Potri.001G177333 [exp]	1.73	0.9848
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.005G122600 [exp]	2.23	0.9891
AT3G03620			MATE efflux family protein (.1...		Potri.013G069250 [exp]	3.46	0.9737
					Potri.005G228550 [exp]	4.24	0.9684
AT1G69320		CLE10	CLAVATA3/ESR-RELATED 10 (.1)		Potri.010G160600 [exp]	7.48	0.9735	CLE9.1
					Potri.006G132951 [exp]	10.04	0.9432
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.017G155300 [exp]	12.68	0.9737
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G020700 [exp]	14.42	0.9797
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Potri.005G121850 [exp]	15.65	0.9605

Compare expression of checked genes

Potri.016G048900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.