Plant FIBer expression Database

Potri.016G049000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57890 852 / 0 Tubulin binding cofactor C domain-containing protein (.1.2)
AT2G42230 813 / 0 C-CAP/cofactor C-like domain-containing protein (.1.2)
AT4G39920 44 / 0.0002 TFCC, POR TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G059100
[exp]
1003 / 0 AT3G57890 876 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2)
Potri.005G074700
[exp]
46 / 6e-05 AT4G39920 332 / 6e-113 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023821
[exp]
905 / 0 AT3G57890 875 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2)
Lus10012025
[exp]
863 / 0 AT3G57890 835 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2)
Lus10016279
[exp]
770 / 0 AT3G57890 747 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2)
Lus10021031
[exp]
748 / 0 AT3G57890 726 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2)
Lus10006364
[exp]
55 / 9e-08 AT4G39920 344 / 1e-117 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
Lus10012318
[exp]
53 / 4e-07 AT4G39920 333 / 2e-113 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0391 CAP_C-like PF07986 TBCC Tubulin binding cofactor C
Representative CDS sequence
>Potri.016G049000.1 pacid=42810625 polypeptide=Potri.016G049000.1.p locus=Potri.016G049000 ID=Potri.016G049000.1.v4.1 annot-version=v4.1
ATGACAACAGAGACAACGTCGACAACCGACCCGAGTCCAGACCCGGCTCCAACTCCAAACCCAAACCCGAATTCAAGCTCCGTAATCCACCCACGACGGG
AGCCATTCGAGCACGGACTCTTACCAATCCCCAAACTAATCTTCCCTGACACGACACAAATCCTAACACAACTCAAACAAAAACTCGCTTCTCACAACCG
AGTCAACTCATCCTTACTCGCTGACTCTCTCCAGATCCCCGCCGACCACGCGAGGCTGATCCTCGACACGCTCGCGTCGGTCCTGAATTCCGAGTCCGAC
CCGCTCGTGAAAGCTCCGCCCGATGAGGTTGATTCAGCTGGTGCCGATTTGCGTGATCTGATTTTGTTTCTATACATCCAGTCTTACAAGAAGTTGTTGC
CGAGAACGCATAAAGATGCTGCTGCTGTTGCTGATGTTTGGCCGTCGACCTCAGCTTTCGATGGCTACTTATCGGCTCTATCGCCGCTTCAGCTTGTGCG
TAGCAACAGCCGCCGGTTTATGCCATCGCAGGCAGATGAAGAGGCTCATCAGTTGTCCTACCTACAAAAACACATGGCTAACATTCTCTCTCTTTTGGCA
GAGTCTGTGGAAGGAGAAGGAGAAGAGTCTCTGGTTTTATCCATGGAAGGATTTGACCACCTTGGATTTCTGATTCAATTTGGTGACAAGGGATCTGAAG
TAGTCACCTTAAGCCAAGCTGCTCCATTTTTTGCCAATTCTGATCCTGACATGCCTGCCGTTCCTGTTCCTGCCACACAAGTCCTTGATTGGATTTCACA
GAATATTGCATCTGCTTTGGAGCATATTACCGAAAGAATTTCTGCAAAAGAAAATGGACCAGCCAATTCATCTGATCCTGATGTTGCCATGGCTGATGCC
TGTACAAGTTCAATCAAGACCTCGCCTAGTGCTAGGGGTTCATGTTTTATTGAGGGGATCTCTAAGTCATCATTTGTAAAGCAAGCATTGGATCTTAAAG
GTTCTTCTTCTGTAAAGGTTCTGAATTGTCATGATTCCATCCTTTACATCTTAGCACCTTTGAGATATGCTACCATTTATGGATGCTCTGATTCCACTAT
AGTTCTTGGAGCTGTTGGCAAGGCTGTGAGGATTGAACATTGTGAGCGAGTTCATGTTATTACAGCAGCAAAACGAGTCTGCATTGCCAATTGTCGTGAG
TGTGTGTTCTTTCTTGGGGTAAATCAACGACCATTAATGGTCGGTGATAACCATAAGTTACAGGTGGCACCATACAATACATTTTATTCAGAGTTGGAGG
AGCACATGGCTGACGTAGGCATAGATGCAAATATCAACAGATGGGATGAAACTTTAGCCTTGGGAGTGGTTGATCCCCATGATTCATTGTCCCATCCTGC
TGGTGTCTCTGATGTTCAAGCTGAATCAGCTGCACGACTGGACCCTGACCAATTTACCAATTTTCTGATTCCAAACTGGTTTGGAGGTGAATCCCCAGGG
TCAACAAAAGATAACCCGTTTCAATTACCCGAGGCTTATATGGCATCTCAGCAGAGAAATCAAAAGAATCTGGGAGAGATAAAGCAATTATTGAGGGAAG
TTCCTCTTGAAGAAAATCAGAAGCGGGAATTGTCAAGTGCACTCCACCTATTATTTAAGGACTGGCTATATGCTTCAGGAAATATCAGACAACTTTACTG
CCTACAAGGTGATTAA
AA sequence
>Potri.016G049000.1 pacid=42810625 polypeptide=Potri.016G049000.1.p locus=Potri.016G049000 ID=Potri.016G049000.1.v4.1 annot-version=v4.1
MTTETTSTTDPSPDPAPTPNPNPNSSSVIHPRREPFEHGLLPIPKLIFPDTTQILTQLKQKLASHNRVNSSLLADSLQIPADHARLILDTLASVLNSESD
PLVKAPPDEVDSAGADLRDLILFLYIQSYKKLLPRTHKDAAAVADVWPSTSAFDGYLSALSPLQLVRSNSRRFMPSQADEEAHQLSYLQKHMANILSLLA
ESVEGEGEESLVLSMEGFDHLGFLIQFGDKGSEVVTLSQAAPFFANSDPDMPAVPVPATQVLDWISQNIASALEHITERISAKENGPANSSDPDVAMADA
CTSSIKTSPSARGSCFIEGISKSSFVKQALDLKGSSSVKVLNCHDSILYILAPLRYATIYGCSDSTIVLGAVGKAVRIEHCERVHVITAAKRVCIANCRE
CVFFLGVNQRPLMVGDNHKLQVAPYNTFYSELEEHMADVGIDANINRWDETLALGVVDPHDSLSHPAGVSDVQAESAARLDPDQFTNFLIPNWFGGESPG
STKDNPFQLPEAYMASQQRNQKNLGEIKQLLREVPLEENQKRELSSALHLLFKDWLYASGNIRQLYCLQGD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G57890 Tubulin binding cofactor C dom... Potri.016G049000
[exp]
0 1
AT2G20880 AP2_ERF AtERF53 ERF domain 53, Integrase-type ... Potri.013G135600
[exp]
7.93 0.6251
AT1G27600 IRX9-L, I9H IRREGULAR XYLEM 9-LIKE, IRREGU... Potri.002G107300
[exp]
9.21 0.6321
AT5G02050 Mitochondrial glycoprotein fam... Potri.004G049600
[exp]
10.39 0.6468 Pt-SDH4.4
AT5G35430 Tetratricopeptide repeat (TPR)... Potri.006G065600
[exp]
14.07 0.6042
Potri.013G144251
[exp]
32.04 0.5879
AT3G02420 unknown protein Potri.017G110600
[exp]
42.14 0.6151
AT3G02090 MPPBETA Insulinase (Peptidase family M... Potri.004G118900
[exp]
58.78 0.5996
AT1G59900 AT-E1 ALPHA, AT... pyruvate dehydrogenase complex... Potri.010G038400
[exp]
66.34 0.5652 ALPHA.8
AT1G06110 SKIP16 SKP1/ASK-interacting protein 1... Potri.017G027000
[exp]
153.80 0.5825
AT1G22920 CSN5A, JAB1, AJ... ARABIDOPSIS JAB1 HOMOLOG 1, CO... Potri.018G006100
[exp]
193.19 0.5641 AJH1.3

Potri.016G049000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.