Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57880 1426 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 1367 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 1280 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 1113 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 1105 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 1066 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 1021 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 941 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 907 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 907 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G058900 [exp] 1461 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 1310 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 1296 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 1295 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 1170 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 1150 / 0 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 1139 / 0 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 1135 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 1132 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012026 [exp] 1447 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 1446 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 1124 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 1110 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 1110 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 1081 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 1007 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 931 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 920 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10033343 [exp] 796 / 0 AT5G12970 821 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0484 [poplar] [flax] Peroxisome PF06398 [poplar] [flax] Pex24p Integral peroxisomal membrane peroxin
Representative CDS sequence Show only first row Show all	>Potri.016G049100.10 pacid=42809947 polypeptide=Potri.016G049100.10.p locus=Potri.016G049100 ID=Potri.016G049100.10.v4.1 annot-version=v4.1 ATGCAGAGGCCTCTACATGAGGATTTTCTATTGAAAGAGACCAATCCCCATCTGGGAGGGGGGAAGATCACCGGTGACAAGCTTACAAGCACCTATGATC TTGTGGAGCAGATGCAATATCTTTATGTCCGGGTCGTTAAGGCCAAGGAATTGCCTGCGAAGGATGTTACAGGTAGTTGTGATCCTTATGTGGAAGTTAA ACTTGGAAACTATAAGGGTACGACTCGGCATTTTGAGAAGAAGTCGAATCCGGAGTGGAACCAGGTGTTTGCATTCTCGAAGGATCGTATGCAGGCCTCG ATGCTTGAGGTTACTGTTAAGGATAAGGATTTTGTGAAGGATGATTTCATGGGTCGGGTTTTGTTTGATTTGAATGAGGTACCAAAACGGGTTCCTCCTG ATAGTCCTTTGGCACCACAGTGGTATCGATTGGAGGATAGGAAGGGAGATAAATTTAAGGGGGAGTTGATGTTAGCGGTGTGGATGGGGACACAGGCAGA TGAAGCTTTTCCAGAAGCATGGCATTCAGATGCAGCTACTGTTACTGGGACGGATGGTCTTGCTAATATTCGTTCCAAGGTATATCTCTCCCCAAAATTA TGGTATTTAAGGGTCAATGTGATTGAAGCTCAGGACCTGCAACCAAGTGACAAAGGCAGGTATCCAGAAGTATATGTTAAAGCTACCCTGGGAAATCAAG TCTTGAGAACAAGAGTTTCTCCTAGCAGGAGTATTAATCCTATGTGGAACGAGGACCTTATGTTTGTGGCAGCAGAACCTTTTGAGGAGCCCTTGATTTT GAGTGTGGAAGATAGGATTGCGCCCAACAAGGATGAAGTATTGGGGAAATGTGCGATTCCAATGCATTATGTGGACAGAAGGTTGGACCATAAGCCTGTG AACACTAGGTGGTTTAATCTGGAGAGACATGTTATTGTAGAAGGGGAAAAGAAGAAAGAAACAAAGTTTTCCAGCAGGATTCACACGAGGATCTGCTTGG AGGGTGGTTATCATGTTTTGGATGAATCAACACACTATAGTAGTGATCTTCGTCCGACAGCTAAACAGCTGTGGAAGAACAGCATAGGGGTACTGGAAGT GGGTATTCTCAATGCTCAGGGATTGATGCCCATGAAGACAAAGGATAGTCGGGGAACAACTGATGCATACTGTGTGGCAAAATATGGGCAGAAGTGGGTT CGTACAAGGACCATTATCGACAGTTTCACACCCAAGTGGAATGAGCAATATACTTGGGAGGTTTTCGATCCCTGTACTGTCATAACAATCGGGGTCTTTG ATAATTGTCATTTGCATGGAGGGGACAAGCCTGGAGGGGCAAGGGATTCAAGGATCGGAAAGGTACGAATCCGTCTTTCCACACTTGAAACTGATAGGGT TTACACACACTCCTACCCACTGTTGGTCCTGCATCCTAATGGTGTCAAGAAGATGGGAGAAATTCATTTGGCAGTCCGTTTTACATGCTCATCCTTGCTT AATATGATGCACATGTATTCACAACCTTTGCTGCCAAAGATGCATTATATCCATCCACTGACTGTCAGCCAGCTAGATAGCTTAAGGCATCAGGCCACTC AGATTGTGTCAATGAGGCTGAGCAGGGCAGAGCCACCATTAAGGAAGGAGATTGTTGAATATATGCTGGATGTGGGGTCTCACATGTGGAGCATGAGAAG AAGTAAAGCCAACTTTTTTAGAATCATGAACGTTTTTGGTGGGCTAATTGCTGTAGGAAAATGGTTTGATCAGATATGCAATTGGAAAAACCCAATCACG ACTGTGCTGATCCACATATTGTTTATAATCCTGGTTCTTTTTCCAGAACTTATCTTGCCCACAATCTTCCTGTATCTCTTCCTGATCGGTGTTTGGTATT ATAGATGGAGGCCAAGGCATCCTCCTCACATGGACACTCGTCTCTCTCATGCAGAGTCTGCACATCCTGATGAATTGGATGAGGAATTTGACACGTTCCC TACTTCGCGGCCACCTGATATTGTAAGGATGAGATATGATCGCTTGAGAAGTATTGCGGGGAGGATTCAGACTGTTGTTGGTGATTTAGCTACTCAAGGG GAGAGGCTGCAATCTCTGCTGAGCTGGCGAGACCCAAGGGCCACAGCCCTGTTTGTGCTTTTTTGTCTGATTGCTGCCATTGTTCTCTATGTTACTCCTT TCCAAGTTGTGGCACTTCTCACTGGGTTTTATGTGCTGAGACATCCTAGGTTCCGCCACAAACTTCCATCAGTTCCACTCAATTTCTTCCGGCGGTTGCC AGCAAGAACCGATTGCATGCTGTGA
AA sequence Show only first row Show all	>Potri.016G049100.10 pacid=42809947 polypeptide=Potri.016G049100.10.p locus=Potri.016G049100 ID=Potri.016G049100.10.v4.1 annot-version=v4.1 MQRPLHEDFLLKETNPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKELPAKDVTGSCDPYVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRMQAS MLEVTVKDKDFVKDDFMGRVLFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKFKGELMLAVWMGTQADEAFPEAWHSDAATVTGTDGLANIRSKVYLSPKL WYLRVNVIEAQDLQPSDKGRYPEVYVKATLGNQVLRTRVSPSRSINPMWNEDLMFVAAEPFEEPLILSVEDRIAPNKDEVLGKCAIPMHYVDRRLDHKPV NTRWFNLERHVIVEGEKKKETKFSSRIHTRICLEGGYHVLDESTHYSSDLRPTAKQLWKNSIGVLEVGILNAQGLMPMKTKDSRGTTDAYCVAKYGQKWV RTRTIIDSFTPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKPGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMGEIHLAVRFTCSSLL NMMHMYSQPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMNVFGGLIAVGKWFDQICNWKNPIT TVLIHILFIILVLFPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHAESAHPDELDEEFDTFPTSRPPDIVRMRYDRLRSIAGRIQTVVGDLATQG ERLQSLLSWRDPRATALFVLFCLIAAIVLYVTPFQVVALLTGFYVLRHPRFRHKLPSVPLNFFRRLPARTDCML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	0	1
AT5G07590			Transducin/WD40 repeat-like su...		Potri.003G151400 [exp]	2.00	0.9157
AT1G01225			NC domain-containing protein-r...		Potri.014G101300 [exp]	2.00	0.9268
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G073925 [exp]	2.44	0.9173
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093900 [exp]	2.82	0.8920
AT1G78430		RIP2	ROP interactive partner 2 (.1)		Potri.001G377900 [exp]	3.16	0.9102
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.011G092500 [exp]	3.74	0.9198
AT3G28040			Leucine-rich receptor-like pro...		Potri.002G233600 [exp]	4.69	0.8685
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.004G061600 [exp]	4.89	0.8875
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.010G125800 [exp]	5.09	0.8865	XYL1.1
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Potri.002G251700 [exp]	5.83	0.8778	Pt-TMKL1.1

Compare expression of checked genes

Potri.016G049100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.