Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06850 1356 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 1201 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 1160 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 1130 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 1130 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G11610 1077 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 1003 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 934 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 886 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G20080 877 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G058700 [exp] 1504 / 0 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 1338 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 1309 / 0 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 1189 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 1181 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 1134 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 1123 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 1113 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 1100 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023823 [exp] 1393 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 1392 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 1170 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 1170 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 1077 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 1068 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 989 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10037479 [exp] 885 / 0 AT5G48060 866 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 879 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 805 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0484 [poplar] [flax] Peroxisome PF08372 [poplar] [flax] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.016G049300.1 pacid=42809121 polypeptide=Potri.016G049302.1.p locus=Potri.016G049300 ID=Potri.016G049300.1.v4.1 annot-version=v4.1 ATGAATCCAATAGCTGCTCCTGACCACAAAGATGACTTCAAATTGAAGAACACAAAGCCTCAGCTTGGGGAACGTTGGCCTCATGGAGGACCACGCGGTG GAGGCGGGTGGATTAGCAGTGAAAGAGCAACAAGCACGTATGATCTTGTTGAGCAGATGTTTTATCTGTATGTCCGAGTTGTGAAAGCCAAAGATCTTCC CACAAACCCAGTAACTGGAAGCTTCGACCCCTACATGGAAGTTAAAGTTGGGAATTATAAAGGAAAAACACAGCATTTTGAGAAGAAAACCAACCCTGAA TGGAACCAGGTTTTCGCTTTCTCAAAGGAGAAAATTCAGTCTTCAGTGGTTGAAGTATTCCTCAGAGATAGAGAGATGGTGTTGAGAGATGATTACGTAG GAAAGGTGGTCTTTGACATGCATGAAGTGCCTACAAGGGTTCCACCAGACAGCCCTTTGGCACCTCAGTGGTATAGATTAGAGGGTCGCAGTGGAGATAG AAAGGTGAGAGGAGAGGTGATGCTTGCAGTTTGGATGGGTACACAGGCTGATGAAGCTTTTCCAGAGTCCTGGCACTCAGATGCTACTTCGGTTCATGGG GAGGGTGTTTTCAATATCCGATCAAAGGTTTATGTTTCGCCAAAACTGTGGTATCTCAGAGTTAATGTGATTGAAGCCCAGGATGTAGAATCGCTTGACA GAAGTCAATTACCACAGGTTTTCGTGAAAGCTCAAGTTGGAAACCAGATACTCAAAACCAAGCTATGTCCAACCAGAACAACAAACCCTATGTGGAATGA AGATCTGATCTTTGTCGCAGCAGAGCCATTTGAAGAGCAGTTGATACTTACTGTCGAAAATAAAGCAAGCCCTGCGAAAGATGAAGTCATGGGGAGAGCA AATTTGCCGCTCCATATCTTCGAGAGGCGCTTGGATCACCGGCCAGTTCACTCCAAGTGGTTCAACCTTGAAAAATTTGGGTTTGGTGCTCTAGAGGGAG ACAAGAGGCACGAGCTCAAATTTTCAACCAGGATTCATCTCAGGGTTTGCCTCGAGGGTGCTTACCATGTACTTGACGAATCAACAATGTACATAAGTGA CCAACGACCAACAGCTAGGCAGCTCTGGAAGCAGCCCATTGGAATCCTTGAAGTCGGCATCCTGAGTGCTCAAGGGCTTCTTCCAATGAAAAAAAAGGAT GGCAGAGGAACTACTGATGCTTATTGTGTAGCCAAGTATGGGCTGAAGTGGGTACGGACCAGAACGATCATTGAAAACTTCAATCCTAAGTGGAATGAGC AGTATACATGGGAGGTGTATGACCCTTGCACGGTGATCACCTTGGGAGTTTTTGACAACTGCCACTTGGGAGGAACTGAAAACCCGGCAACTGTTGGTGG AGCACGAAATGACATGAGAATTGGAAAGGTAAGAATTCGACTATCTACCTTGGAAACAGATAGAATATACACACACTCCTATCCACTTCTAGTCCTACAA CCATCTGGGCTGAAAAAGATGGGAGAACTCCAGTTAGCAGTTCGATTCACTTGCCTATCACTAGCAAATATGATTTACCTCTATGGGCAACCCTTGTTGC CAAAAATGCATTATTTGCATTCTTTTACTGTAAATCAGCTAGACAGTTTGAGATATCAGGCCATGAATATTGTAGCAGTAAGGCTTGGCAGAGCTGAGCC ACCACTAAGGAAAGAGACTGTGGAGTATATGTTGGATGTGGATTCTCACATGTGGAGCATGAGAAGGAGCAAAGCTAACTTCTTCCGAATTGTCTCGCTG TTTTCTGGGGTGATCTCAATGAGCAAGTGGCTTGGTGAAGTGTGTAAATGGAAGAATCCGGTGACAACAGTCCTAGTTCACGTTTTATTTTTCATATTGA TATGCTACCCAGAACTGATTCTACCAACTATTTTCCTATATATGTTTTTGATTGGATTATGGAATTACCGGTTCCGCGCAAGGCACCCTCCTCACATGGA TACCAAACTTTCGTGGGCAGAAGCAGTTCACCCAGATGAGCTGGATGAAGAGTTTGACACATTTCCCACATCAAAGCAACAGGACGTGGCGCGAATGAGG TACGACAGACTTAGAAGTGTTGCAGGAAGGATCCAGACTGTGGTGGGAGACATGGCAACACAAGGGGAACGTTTTCAAGCTCTGCTCAGCTGGAGAGACC CAAGAGCAACCAGCCTCTACATAATTTTCTGCCTTATTGCAGCCGTCGTGCTCTACATAACACCTTTTAAAATAATTACCTTGGGTACAGGCTTATTCTG GCTGCGACATCCAAGGTTTCGAAGCAAGCAACCATCAGTTCCCAGCAATTTCTTCAGGAGATTGCCATCACGAGCTGATAGCATGCTTTGA
AA sequence Show only first row Show all	>Potri.016G049300.1 pacid=42809121 polypeptide=Potri.016G049302.1.p locus=Potri.016G049300 ID=Potri.016G049300.1.v4.1 annot-version=v4.1 MNPIAAPDHKDDFKLKNTKPQLGERWPHGGPRGGGGWISSERATSTYDLVEQMFYLYVRVVKAKDLPTNPVTGSFDPYMEVKVGNYKGKTQHFEKKTNPE WNQVFAFSKEKIQSSVVEVFLRDREMVLRDDYVGKVVFDMHEVPTRVPPDSPLAPQWYRLEGRSGDRKVRGEVMLAVWMGTQADEAFPESWHSDATSVHG EGVFNIRSKVYVSPKLWYLRVNVIEAQDVESLDRSQLPQVFVKAQVGNQILKTKLCPTRTTNPMWNEDLIFVAAEPFEEQLILTVENKASPAKDEVMGRA NLPLHIFERRLDHRPVHSKWFNLEKFGFGALEGDKRHELKFSTRIHLRVCLEGAYHVLDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKKKD GRGTTDAYCVAKYGLKWVRTRTIIENFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGTENPATVGGARNDMRIGKVRIRLSTLETDRIYTHSYPLLVLQ PSGLKKMGELQLAVRFTCLSLANMIYLYGQPLLPKMHYLHSFTVNQLDSLRYQAMNIVAVRLGRAEPPLRKETVEYMLDVDSHMWSMRRSKANFFRIVSL FSGVISMSKWLGEVCKWKNPVTTVLVHVLFFILICYPELILPTIFLYMFLIGLWNYRFRARHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKQQDVARMR YDRLRSVAGRIQTVVGDMATQGERFQALLSWRDPRATSLYIIFCLIAAVVLYITPFKIITLGTGLFWLRHPRFRSKQPSVPSNFFRRLPSRADSML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06850			C2 calcium/lipid-binding plant...		Potri.016G049300 [exp]	0	1
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Potri.001G238400 [exp]	3.46	0.9212
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.004G223900 [exp]	3.46	0.9352
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G040700 [exp]	4.24	0.9107
AT4G16790			hydroxyproline-rich glycoprote...		Potri.003G079900 [exp]	5.29	0.9060
AT3G52490			Double Clp-N motif-containing ...		Potri.010G241600 [exp]	5.47	0.9128
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.017G137600 [exp]	5.74	0.8993
AT3G48100		ATRR2, IBC6, AR...	INDUCED BY CYTOKININ 6, ARABID...		Potri.015G070000 [exp]	6.48	0.8798
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Potri.005G032300 [exp]	6.63	0.8797
AT4G37250			Leucine-rich repeat protein ki...		Potri.005G142300 [exp]	7.74	0.9005
AT4G21740			unknown protein		Potri.001G371800 [exp]	8.24	0.8641

Compare expression of checked genes

Potri.016G049300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.