Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PGIP.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06860 372 / 2e-129 ATPGIP1, PGIP1 polygalacturonase inhibiting protein 1 (.1) AT5G06870 335 / 1e-114 PGIP2, ATPGIP2 ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, polygalacturonase inhibiting protein 2 (.1) AT3G12145 286 / 2e-95 FLOR1, FLR1 FLOR1, Leucine-rich repeat (LRR) family protein (.1) AT3G12610 157 / 8e-45 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT5G12940 143 / 1e-39 Leucine-rich repeat (LRR) family protein (.1) AT3G20820 139 / 3e-38 Leucine-rich repeat (LRR) family protein (.1) AT5G07280 113 / 2e-27 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17750 112 / 3e-27 AtPEPR2 PEP1 receptor 2 (.1) AT1G33600 110 / 6e-27 Leucine-rich repeat (LRR) family protein (.1) AT3G11010 107 / 1e-25 AtRLP34 receptor like protein 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G058600 [exp] 522 / 0 AT5G06860 383 / 1e-133 polygalacturonase inhibiting protein 1 (.1) Potri.016G049600 [exp] 411 / 8e-145 AT5G06860 354 / 3e-122 polygalacturonase inhibiting protein 1 (.1) Potri.006G058500 [exp] 274 / 6e-92 AT5G06860 258 / 2e-85 polygalacturonase inhibiting protein 1 (.1) Potri.009G064300 [exp] 144 / 5e-40 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.003G207000 [exp] 140 / 1e-38 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.001G017500 [exp] 139 / 4e-38 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 132 / 1e-35 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016700 [exp] 115 / 3e-28 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.018G088062 [exp] 112 / 3e-27 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023824 [exp] 383 / 1e-133 AT5G06860 366 / 1e-126 polygalacturonase inhibiting protein 1 (.1) Lus10021028 [exp] 376 / 7e-131 AT5G06860 362 / 2e-125 polygalacturonase inhibiting protein 1 (.1) Lus10021029 [exp] 332 / 9e-114 AT5G06860 325 / 4e-111 polygalacturonase inhibiting protein 1 (.1) Lus10031824 [exp] 145 / 3e-40 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10037705 [exp] 135 / 9e-37 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10002551 [exp] 133 / 9e-36 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10023825 [exp] 126 / 1e-34 AT2G32060 168 / 3e-53 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Lus10010949 [exp] 122 / 1e-31 AT3G20820 440 / 8e-155 Leucine-rich repeat (LRR) family protein (.1) Lus10031377 [exp] 121 / 2e-31 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10015700 [exp] 116 / 2e-30 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G049400.1 pacid=42810096 polypeptide=Potri.016G049400.1.p locus=Potri.016G049400 ID=Potri.016G049400.1.v4.1 annot-version=v4.1 ATGAAAACCCTTTTCCTTTCCCTTGTCATTTCCACTCTTCTTTCACTCTCCCTCTCAAAAGAACTTTGCAATTCCCATGACAAAAAGGTTCTCCTACAAA TCAAAAAACATTTTGGCGATCCATACCTCTTAGCTTCATGGAAATCGGACACTGATTGCTGCAAGGCTTGGTACCAAGTTGAGTGTGATTCCACCTCCAA CCGCATCATTTCTCTCACAATTTTTGCTGGCAACCTTTCTGGCCAAATCCCCGCTGCAGTTGGGGACTTGCCCTATCTCCAGACCCTTGTATTCCGCAAG CTGACAGATGTTACAGGCCCCATACAACCTGCCATTGCCAAGCTCGTACACTTAAATTTTCTCAGACTTGACCGGCTAAATCTCACTGGGACAGTACCTG GCTTTCTTAGCAAACTCAAGAAGCTCACATTCTTGGACTTGTCTTTTAACGGCCTCTCTGGATCAATACCGAGCTCACTAGCTTTGCTGCCAAATCTTGG TGCTCTTCACTTGGACAGGAACAGGCTGACAGGTTCAATCCCAGAATCATTTGGGACATTTAAAGGCAGCGTACCGGATCTTTACCTGTCTCACAACCAA CTTACTGGTGAAATCCCTGCATCATTAGGGAACATGGACTTCAGCGTCATTGATTTATCACGCAACAAGCTTGTTGGTGATGCTTCCATGCTATTTGGGC TGAACAAAACTACTCGAAATGTGTATCTCTCTAGGAATATATTGAACTTCAATTTGTCAAATGTGACGTTTCCAAGTGGCTTGGAAAATCTGGACATTAG TCACAACAAGATTTTCGGAAGCATACCTCCACAAATGACTCAGATACCTTTGCAGTCCCTGAACATGAGTTACAACAGGCTGTGTGGCCAGATTCCTGTA GGTGGTAAGCTGCAGAGCTTTGATAACTTCACATATTTCCATAATAGGTGCTTGTGCGGGGTTCCCCTTGAAAACTGCAAATAG
AA sequence Show only first row Show all	>Potri.016G049400.1 pacid=42810096 polypeptide=Potri.016G049400.1.p locus=Potri.016G049400 ID=Potri.016G049400.1.v4.1 annot-version=v4.1 MKTLFLSLVISTLLSLSLSKELCNSHDKKVLLQIKKHFGDPYLLASWKSDTDCCKAWYQVECDSTSNRIISLTIFAGNLSGQIPAAVGDLPYLQTLVFRK LTDVTGPIQPAIAKLVHLNFLRLDRLNLTGTVPGFLSKLKKLTFLDLSFNGLSGSIPSSLALLPNLGALHLDRNRLTGSIPESFGTFKGSVPDLYLSHNQ LTGEIPASLGNMDFSVIDLSRNKLVGDASMLFGLNKTTRNVYLSRNILNFNLSNVTFPSGLENLDISHNKIFGSIPPQMTQIPLQSLNMSYNRLCGQIPV GGKLQSFDNFTYFHNRCLCGVPLENCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.016G049400 [exp]	0	1	PGIP.3
AT5G57420	AUX_IAA	IAA33	indole-3-acetic acid inducible...		Potri.006G166900 [exp]	1.41	0.9198
AT3G45650		NAXT1	nitrate excretion transporter1...		Potri.008G045100 [exp]	2.23	0.9231
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447832 [exp]	2.44	0.9118
AT2G17080			Arabidopsis protein of unknown...		Potri.005G248975 [exp]	3.46	0.8889
AT4G28650			Leucine-rich repeat transmembr...		Potri.002G256500 [exp]	4.00	0.8781
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G064700 [exp]	4.47	0.8915
AT2G25735			unknown protein		Potri.006G244200 [exp]	8.12	0.8478
AT2G17080			Arabidopsis protein of unknown...		Potri.005G248950 [exp]	8.83	0.8140
AT5G12460			Protein of unknown function (D...		Potri.009G051600 [exp]	12.96	0.8442
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Potri.006G152500 [exp]	13.74	0.7731	CKX3.1

Compare expression of checked genes

Potri.016G049400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.