Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PGIP.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06860 354 / 3e-122 ATPGIP1, PGIP1 polygalacturonase inhibiting protein 1 (.1) AT5G06870 311 / 2e-105 PGIP2, ATPGIP2 ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, polygalacturonase inhibiting protein 2 (.1) AT3G12145 283 / 3e-94 FLOR1, FLR1 FLOR1, Leucine-rich repeat (LRR) family protein (.1) AT3G12610 159 / 7e-46 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT5G12940 144 / 3e-40 Leucine-rich repeat (LRR) family protein (.1) AT3G20820 138 / 6e-38 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 114 / 2e-28 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 110 / 5e-27 Leucine-rich repeat (LRR) family protein (.1) AT3G49670 110 / 1e-26 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G73080 110 / 2e-26 ATPEPR1, PEPR1 PEP1 receptor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G058600 [exp] 421 / 1e-148 AT5G06860 383 / 1e-133 polygalacturonase inhibiting protein 1 (.1) Potri.016G049400 [exp] 406 / 1e-142 AT5G06860 372 / 2e-129 polygalacturonase inhibiting protein 1 (.1) Potri.006G058500 [exp] 343 / 5e-119 AT5G06860 258 / 2e-85 polygalacturonase inhibiting protein 1 (.1) Potri.009G064300 [exp] 149 / 4e-42 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 149 / 9e-42 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.003G207000 [exp] 137 / 2e-37 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.001G017500 [exp] 135 / 9e-37 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 122 / 1e-30 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.008G007600 [exp] 114 / 6e-28 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021028 [exp] 352 / 2e-121 AT5G06860 362 / 2e-125 polygalacturonase inhibiting protein 1 (.1) Lus10023824 [exp] 348 / 6e-120 AT5G06860 366 / 1e-126 polygalacturonase inhibiting protein 1 (.1) Lus10021029 [exp] 342 / 1e-117 AT5G06860 325 / 4e-111 polygalacturonase inhibiting protein 1 (.1) Lus10037705 [exp] 143 / 2e-39 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10002551 [exp] 136 / 8e-37 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10031824 [exp] 135 / 1e-36 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10010949 [exp] 134 / 2e-36 AT3G20820 440 / 8e-155 Leucine-rich repeat (LRR) family protein (.1) Lus10023825 [exp] 130 / 6e-36 AT2G32060 168 / 3e-53 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Lus10031377 [exp] 132 / 2e-35 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10015700 [exp] 116 / 2e-30 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G049600.1 pacid=42810441 polypeptide=Potri.016G049600.1.p locus=Potri.016G049600 ID=Potri.016G049600.1.v4.1 annot-version=v4.1 ATGAAAGCCCTCTTCATCTCCTTACTTGTTCTCAATCTCCTTTCACTCTCCTTTTCAGAACTTTGCAATCCCCACGATAAAAAAGTTCTCCTCCAAATTA AAAACCATTTTGGTGATCCTTACCTCCTAGCCTCATGGCTATCGGACACGGACTGCTGCACATCTTGGAACGCGGTGGAGTGTGACCCTACCACCAACCG CATTGTTTCCCTAAGAATCTTTTCTGGCGACCTTTCTGGTGAAATCCCTGCTGAAGTTGGGGACTTGCCCTATCTCGAGACCCTTGAGTTCCACAAGCTG ACAAATATTACAGGCCCGATACCGCCCTCCATTTCCAATCTCATACATCTCATTTCACTCAGACTTAGCCGACTCAACCTCACTGGCCCAGTACCTGACT CTCTTAGCAAACTCAAGAATCTGAGAGTATTGGTCCTGTCTTTCAACAGCCTCTCAGGATCAATACCAAGTTCACTCGCTTTAATGCCGGAAATTGATAT TCTTGAATTGGATAGGAATAATCTTACTGGTCCAATCCCAGAATCATTTGGCAACTTTGCAGGCAGAGTACCGGGTATTTCCCTGTCTCATAACCAACTT TCTGGTAAAATCCCTGCTTCATTAGACAACACAGACTTTCGTTTGATTGATTTCTCACGCAACAAACTTGAAGGTGATGCTTCCATGCTTTTTGGGCCAA ACAAAACTAGTGGAAGTGTGGATCTCTCCAGGAATTTGCTGGAGTTTAATCTTTCAAAGGTGGTGTTTCCCAACACTTTGACATATTTGGATGTTAATCA CAACAAGATTTTCGGGAGCATTCCTACTCAGATGACTCAGTTAAATTACCTGTCCTTGAACGTGAGTTACAACAGGCTTTGCGGTCAGATTCCCCAAGGT GGTAAATTACAGACCTTAGATTACACCGCATATTTCCATAACAGGTGCTTGTGCGGCGCTCCACTGGCAAGCTGCAAATAG
AA sequence Show only first row Show all	>Potri.016G049600.1 pacid=42810441 polypeptide=Potri.016G049600.1.p locus=Potri.016G049600 ID=Potri.016G049600.1.v4.1 annot-version=v4.1 MKALFISLLVLNLLSLSFSELCNPHDKKVLLQIKNHFGDPYLLASWLSDTDCCTSWNAVECDPTTNRIVSLRIFSGDLSGEIPAEVGDLPYLETLEFHKL TNITGPIPPSISNLIHLISLRLSRLNLTGPVPDSLSKLKNLRVLVLSFNSLSGSIPSSLALMPEIDILELDRNNLTGPIPESFGNFAGRVPGISLSHNQL SGKIPASLDNTDFRLIDFSRNKLEGDASMLFGPNKTSGSVDLSRNLLEFNLSKVVFPNTLTYLDVNHNKIFGSIPTQMTQLNYLSLNVSYNRLCGQIPQG GKLQTLDYTAYFHNRCLCGAPLASCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.016G049600 [exp]	0	1	PGIP.2
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Potri.006G103900 [exp]	3.60	0.9459
AT4G27590			Heavy metal transport/detoxifi...		Potri.012G007200 [exp]	5.38	0.8656
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Potri.006G022200 [exp]	5.83	0.9319	Pt-CYP709.2
AT5G67060	bHLH	HEC1, bHLH088	HECATE 1, basic helix-loop-hel...		Potri.007G044600 [exp]	6.48	0.9313
AT2G04050			MATE efflux family protein (.1...		Potri.004G094650 [exp]	7.21	0.8712
					Potri.016G037100 [exp]	8.24	0.9046
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.006G214700 [exp]	8.71	0.8966
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G141700 [exp]	10.00	0.8760	Pt-CHIA5.2
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Potri.010G042400 [exp]	10.67	0.9233	Pt-INO.2
AT3G28960			Transmembrane amino acid trans...		Potri.017G083700 [exp]	11.09	0.8286

Compare expression of checked genes

Potri.016G049600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.