Plant FIBer expression Database

Potri.016G049700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12150 614 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G058400
[exp]
685 / 0 AT3G12150 623 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023826
[exp]
597 / 0 AT3G12150 577 / 0.0 unknown protein
Lus10027799
[exp]
587 / 0 AT3G12150 556 / 0.0 unknown protein
Lus10021026
[exp]
393 / 3e-137 AT3G12150 392 / 4e-137 unknown protein
Lus10035501
[exp]
350 / 4e-118 AT3G12150 333 / 3e-111 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF09752 DUF2048 Abhydrolase domain containing 18
Representative CDS sequence
>Potri.016G049700.1 pacid=42810320 polypeptide=Potri.016G049700.1.p locus=Potri.016G049700 ID=Potri.016G049700.1.v4.1 annot-version=v4.1
ATGGTAACAGTCAATATAGGAATGCTTCATTATGTAATAGACCACATTTATGGAGCGTTTATGCACAGAACCAAAATAAGCCCACCATTCTTTTCTAGAG
GGTGGGGTGGTTCAAAGCTTGAGCTTTTAGAGAGAATGATTAAGGACTTATTCCCTGAAGTTGAAGGCCAAAATTGGCCTCCAAGTTTAATACAACCTAT
TTGGAGAACAGTTTGGGAGACCAGAAGTGCTTGTTTAAGAGAAGGTGTTTTTAGGACTACTTGTGATGAGCAGTTGATTAGTGCATTGCCTCCTGAGAGT
CACACTGCAAGGGTTGCTTTTCTTGCACCCAAACATGTCCCACCACAGAAGATGGCCTGTGTGGTTCATCTCGCAGGCACTGGGGACCATTCATTTGATC
GGAGATTGCATCTTGGTGGACCATTATTGAAGGAAAATATTGCAACCATGGTGCTAGAGAGCCCTTTCTATGGACGGAGACGACCCATGCTGCAGCATGG
CGCAAAGCTCTTGTGTGTTAGTGACTTGCTTTTATTAGGTAGGACAACCATTGACGAGACACGCAGTCTTTTACATTGGTTAGACTCTGAGGCAGGGTTT
GGAAAGATGGGTGTTTGTGGACTGAGCATGGGAGGAGTACATGCTGCAATGGTTGGATCACTGCACCCCACACCTGTTGCAACCCTTCCTTTTCTTTCTC
CACACTCTGCTGTTGTGGCATTCTGTGAGGGGATATTGAGGTATGGCACTGCATGGGAGGCACTGAGAGAGGATCTTGCAGTGCAAAAGCCTGCAATGAC
TCTCGAGGATGTGAGAGAACGGATGCGAAATGTGCTGTCTCTCACAGATGTCACGCGCTTTCCAATTCCCAAAAATCCCAATGCTGTAATATTTGTTGCT
GCAACCGATGATGGATACATACCAAAACACTCTGTTTTGGAGCTTCAAAAAGCTTGGCCAGGTTCAGAGGTGAGATGGGTTACTGGTGGACATGTCTCAT
CCTTTCTTCTGCACAATGATGAGTTTCGGAGAGCGATTATTGATGGGCTTAACAGATTAGAGTGGAAGGAGCCTCCATTTTGA
AA sequence
>Potri.016G049700.1 pacid=42810320 polypeptide=Potri.016G049700.1.p locus=Potri.016G049700 ID=Potri.016G049700.1.v4.1 annot-version=v4.1
MVTVNIGMLHYVIDHIYGAFMHRTKISPPFFSRGWGGSKLELLERMIKDLFPEVEGQNWPPSLIQPIWRTVWETRSACLREGVFRTTCDEQLISALPPES
HTARVAFLAPKHVPPQKMACVVHLAGTGDHSFDRRLHLGGPLLKENIATMVLESPFYGRRRPMLQHGAKLLCVSDLLLLGRTTIDETRSLLHWLDSEAGF
GKMGVCGLSMGGVHAAMVGSLHPTPVATLPFLSPHSAVVAFCEGILRYGTAWEALREDLAVQKPAMTLEDVRERMRNVLSLTDVTRFPIPKNPNAVIFVA
ATDDGYIPKHSVLELQKAWPGSEVRWVTGGHVSSFLLHNDEFRRAIIDGLNRLEWKEPPF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G12150 unknown protein Potri.016G049700
[exp]
0 1
AT1G08280 Glycosyltransferase family 29 ... Potri.004G184200
[exp]
3.60 0.8728
AT1G68820 Transmembrane Fragile-X-F-asso... Potri.008G116400
[exp]
3.74 0.9113
AT2G33310 AUX_IAA IAA13 auxin-induced protein 13 (.1.2... Potri.010G065200
[exp]
7.87 0.8218
AT1G13440 GAPC2, GAPC-2 GLYCERALDEHYDE-3-PHOSPHATE DEH... Potri.015G091400
[exp]
9.16 0.8764 Pt-GAPDH1.2
AT5G17920 ATCIMS, ATMETS,... methionine synthesis 1, COBALA... Potri.004G190900
[exp]
10.00 0.8940
AT4G14500 Polyketide cyclase/dehydrase a... Potri.010G076500
[exp]
10.95 0.8929
AT3G12150 unknown protein Potri.006G058400
[exp]
11.31 0.8686
AT1G09150 pseudouridine synthase and arc... Potri.013G013700
[exp]
14.96 0.8836
AT5G62700 atgcp3, TUB3 tubulin beta chain 3 (.1) Potri.001G272700
[exp]
18.97 0.8868
AT2G35120 Single hybrid motif superfamil... Potri.012G123700
[exp]
21.77 0.8847 gdcH1

Potri.016G049700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.