Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06900 535 / 0 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT2G42250 413 / 8e-140 CYP712A1 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) AT3G20950 401 / 5e-135 CYP705A32 "cytochrome P450, family 705, subfamily A, polypeptide 32", cytochrome P450, family 705, subfamily A, polypeptide 32 (.1) AT1G50520 397 / 2e-133 CYP705A27 "cytochrome P450, family 705, subfamily A, polypeptide 27", cytochrome P450, family 705, subfamily A, polypeptide 27 (.1) AT3G20940 392 / 1e-131 CYP705A31P, CYP705A30 "cytochrome P450, family 705, subfamily A, polypeptide 30", cytochrome P450, family 705, subfamily A, polypeptide 30 (.1) AT3G20100 391 / 2e-131 CYP705A19 "cytochrome P450, family 705, subfamily A, polypeptide 19", cytochrome P450, family 705, subfamily A, polypeptide 19 (.1) AT3G20130 389 / 3e-130 GPS1, CYP705A22 gravity persistence signal 1, "cytochrome P450, family 705, subfamily A, polypeptide 22", cytochrome P450, family 705, subfamily A, polypeptide 22 (.1.2) AT5G47990 387 / 1e-129 THAD1, THAD, CYP705A5 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) AT3G20140 385 / 6e-129 CYP705A23 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1) AT1G50560 380 / 7e-127 CYP705A25 "cytochrome P450, family 705, subfamily A, polypeptide 25", cytochrome P450, family 705, subfamily A, polypeptide 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G058200 [exp] 677 / 0 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.013G027000 [exp] 515 / 6e-180 AT5G06900 357 / 3e-118 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037100 [exp] 510 / 9e-178 AT5G06900 383 / 4e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037201 [exp] 509 / 3e-177 AT5G06900 382 / 6e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.016G052600 [exp] 464 / 1e-159 AT2G42250 512 / 2e-178 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.006G057900 [exp] 445 / 2e-152 AT2G42250 725 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.006G190800 [exp] 445 / 2e-152 AT2G42250 509 / 2e-177 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.007G085000 [exp] 383 / 1e-127 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 378 / 3e-126 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035502 [exp] 695 / 0 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10005878 [exp] 501 / 2e-174 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10040868 [exp] 483 / 6e-167 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10027798 [exp] 436 / 1e-151 AT5G06900 349 / 1e-117 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10023827 [exp] 386 / 4e-129 AT2G42250 652 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Lus10013150 [exp] 370 / 7e-123 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 365 / 8e-121 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 354 / 1e-116 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021620 [exp] 348 / 2e-114 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021158 [exp] 347 / 4e-114 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.016G049800.1 pacid=42808913 polypeptide=Potri.016G049800.1.p locus=Potri.016G049800 ID=Potri.016G049800.1.v4.1 annot-version=v4.1 ATGGCTGATATCCAAGGCTATATCATACTTTTCCTATTATGGCTACTCTCCACCATTTTGGTCAGAGCAATACTAAACAAGACTCGAGCCAAACCTCGCC TTCCACCGAGCCCATTGGCCTTACCAATCATTGGACACCTCCATCTCCTTGCCCCAATACCCCACCAAGCTCTTCATAAGCTCTCAACCCGGTATGGACC ATTGATTCATTTATTCCTTGGTTCTGTCCCTTGTGTTGTTGCTTCTACACCTGAGACTGCAAAGGAGTTCCTCAAAACTCATGAAAATTCTTTCTGCGAT CGTCCTAAGTCAACCGCAGTCGATTTTCTAACATATGGATCAGCTGATTTCTCATTTGCCCCTTATGGACCTTACTGGAAATTCATGAAGAAAATTTGTA TGACTGAACTTCTTGGAGGTCGAATGTTAGACCAGCTTCTTCCAGTTAAGCATGAAGAGATTAGGCAGTTTTTACAGTTCTTGCTAAAGAAAGCAAATGC AAGAGAGTCAATTGATGTTGGAAGTCAACTTATAAGGCTAACTAATAATGTTATATCGAGAATGGCAATGAGCCAAAGGTGTTCAGATAATGATGATGAA GCAGATGAGGTCAGGAATTTGGTGCATGAGGTAGCTGATCTTACAGGGAAGTTTAATTTGTCAGATTTTATTTGGTTTTGCAAGAACTTGGATTTGCAGG GATTTGGAAAAAGGCTGAAGGAAGTCCGCAAAAGGTTCGACACGATGACGGAAAGGATCATAATGGAGCATGAAGAGGCGAGGAAGAAAAAGAAAGAAAC TGGTGAAGGTGACCCCGTGAAGGATCTACTTGATATTTTACTTGATATATCAGAAGATGATAGCTCAGAAATGAAATTGACCAGAGAAAATATCAAGGCG TTCATACTGGACATATTCGCGGCGGGGACAGACACCTCTGCTGTTACCATGGAATGGGCACTAGCAGAGCTCATCAATAACCCAAACATCTTGGAGAGAG CAAGAGAAGAGATAGATTCTGTTGTAGGACAAAGCAGACTAGTACAAGAATCAGACATCGCTAACCTGCCCTACGTTCAAGCTATACTAAAGGAAACACT GAGGCTTCACCCCACTGGTCCAATAATTCTGAGGGAATCAAGTGAAAGCTGCACCATCAATGGCTATGAAATTCCAGCAAGAACCAGGCTATTCGTTAAC GTGTGGGCTATTAATAGAGATCCAAACTACTGGGAGAACCCACTTGAGTTCGAACCGGAAAGGTTTCTTTGCGCAGGAGAAAATGGAAAGAGTCAGCTGG ATGTGAGGGGTCAGCATTTTCACTTTCTTCCATTTGGGAGTGGAAGAAGAGGGTGCCCTGGAACTACACTGGCACTTCAAATGGTTCAAACAGGCCTTGC TGCTATGATTCAATGCTTTGATTGGAAAGTTAATGGCACTGTTGACATGCAAGAAGGAACTGGTATAACACTTCCAAGGGCCCATCCCTTAATTTGTGTC CCAGTGGCAAGGCTCAATCCATTTCCATCGTTCTGA
AA sequence Show only first row Show all	>Potri.016G049800.1 pacid=42808913 polypeptide=Potri.016G049800.1.p locus=Potri.016G049800 ID=Potri.016G049800.1.v4.1 annot-version=v4.1 MADIQGYIILFLLWLLSTILVRAILNKTRAKPRLPPSPLALPIIGHLHLLAPIPHQALHKLSTRYGPLIHLFLGSVPCVVASTPETAKEFLKTHENSFCD RPKSTAVDFLTYGSADFSFAPYGPYWKFMKKICMTELLGGRMLDQLLPVKHEEIRQFLQFLLKKANARESIDVGSQLIRLTNNVISRMAMSQRCSDNDDE ADEVRNLVHEVADLTGKFNLSDFIWFCKNLDLQGFGKRLKEVRKRFDTMTERIIMEHEEARKKKKETGEGDPVKDLLDILLDISEDDSSEMKLTRENIKA FILDIFAAGTDTSAVTMEWALAELINNPNILERAREEIDSVVGQSRLVQESDIANLPYVQAILKETLRLHPTGPIILRESSESCTINGYEIPARTRLFVN VWAINRDPNYWENPLEFEPERFLCAGENGKSQLDVRGQHFHFLPFGSGRRGCPGTTLALQMVQTGLAAMIQCFDWKVNGTVDMQEGTGITLPRAHPLICV PVARLNPFPSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.016G049800 [exp]	0	1
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Potri.003G166900 [exp]	8.48	0.7965	Pt-PBS1.1
AT3G17675			Cupredoxin superfamily protein...		Potri.003G117900 [exp]	13.56	0.8555
AT4G28400			Protein phosphatase 2C family ...		Potri.017G013300 [exp]	21.42	0.7655
AT3G20220			SAUR-like auxin-responsive pro...		Potri.010G253900 [exp]	31.11	0.7853
AT5G01710			methyltransferases (.1)		Potri.006G105100 [exp]	73.97	0.7486
					Potri.001G142150 [exp]	107.98	0.6969
AT3G25730	AP2_ERF	EDF3	ethylene response DNA binding ...		Potri.004G220700 [exp]	172.49	0.7150
AT5G63905			unknown protein		Potri.002G118366 [exp]	174.58	0.7383
AT4G30780			unknown protein		Potri.006G180500 [exp]	222.04	0.7056

Compare expression of checked genes

Potri.016G049800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.