Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12160 387 / 1e-138 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT5G47960 352 / 8e-125 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT5G65270 312 / 5e-109 AtRABA4a RAB GTPase homolog A4A (.1) AT4G39990 311 / 1e-108 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT1G09630 272 / 2e-93 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT1G07410 271 / 3e-93 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT1G06400 270 / 2e-92 ARA2, AtRABA1a, AtRab11E, Ara-2 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) AT1G16920 263 / 1e-89 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT5G60860 262 / 2e-89 AtRABA1f RAB GTPase homolog A1F (.1) AT2G33870 261 / 6e-89 ArRABA1h RAB GTPase homolog A1H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G057700 [exp] 424 / 2e-153 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.001G270100 [exp] 352 / 6e-125 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.007G096000 [exp] 327 / 5e-115 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.005G073000 [exp] 326 / 1e-114 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.010G197200 [exp] 279 / 4e-96 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.006G000300 [exp] 278 / 8e-96 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.008G061300 [exp] 274 / 4e-94 AT1G07410 367 / 9e-131 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.003G004100 [exp] 271 / 5e-93 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.011G070300 [exp] 269 / 5e-92 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016284 [exp] 373 / 4e-133 AT3G12160 386 / 2e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10012032 [exp] 369 / 1e-131 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021023 [exp] 372 / 5e-128 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023829 [exp] 365 / 1e-127 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10035924 [exp] 325 / 3e-114 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10014732 [exp] 324 / 8e-114 AT5G47960 332 / 6e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10025738 [exp] 323 / 3e-113 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1) Lus10000637 [exp] 323 / 4e-113 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10023153 [exp] 322 / 5e-113 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10002725 [exp] 319 / 1e-111 AT5G47960 334 / 1e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.016G050400.1 pacid=42809522 polypeptide=Potri.016G050400.1.p locus=Potri.016G050400 ID=Potri.016G050400.1.v4.1 annot-version=v4.1 ATGTCGAATTATGTTGATTACAATCAAAAGATTGATTATGTTTTCAAGATTGTGCTAATTGGAGATTCAGCAGTTGGAAAATCACAGCTTCTTGCGAGGT TTGCAAGGAATGAATTCACTGTGGATTCTAAAGCCACCATTGGGGTTGAATTCCAGACAAAAACGCTTGCTATGCATAACAAGACGGTAAAAGCACAGAT TTGGGACACTGCTGGCCAAGAAAGATACAGGGCAGTGACGAGTGCATACTACCGGGGAGCAGTTGGTGCTATGTTAGTTTATGACATGACCAAGCGCCAG TCATTCGATCACATGGCTAGATGGCTTGAGGAATTGAGGGGGCATGCTGATAAGAGCATTATTATCATGCTCATTGGCAACAAGTGTGACCTGGGGAGTC TCCGAGCAGTTCCGGCAGAAGATGCTAAGGAGTTTGCTCAAAGAGAGAATCTCTTCTTTATGGAGACATCAGCACTTGAGGCTACCAATGTTGAGACTGC TTTTTTAACAATGCTGACAGAAATATATAGGATAATCAGCAAGAGAACTCTTGCTGGCAATGATGAATCGAATGAAAATTCAGGTGCCTTCAAGGGAACT AGAATTTTAGTTCCTTCACAGGAGCAGAATTCTGAAAAGAAAGGTTGCTGCATGTAA
AA sequence Show only first row Show all	>Potri.016G050400.1 pacid=42809522 polypeptide=Potri.016G050400.1.p locus=Potri.016G050400 ID=Potri.016G050400.1.v4.1 annot-version=v4.1 MSNYVDYNQKIDYVFKIVLIGDSAVGKSQLLARFARNEFTVDSKATIGVEFQTKTLAMHNKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQ SFDHMARWLEELRGHADKSIIIMLIGNKCDLGSLRAVPAEDAKEFAQRENLFFMETSALEATNVETAFLTMLTEIYRIISKRTLAGNDESNENSGAFKGT RILVPSQEQNSEKKGCCM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.016G050400 [exp]	0	1
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123200 [exp]	26.26	0.8210
AT1G79680		ATWAKL10	WALL ASSOCIATED KINASE (WAK)-L...		Potri.018G148498 [exp]	26.73	0.8386
AT1G20070			unknown protein		Potri.005G241800 [exp]	26.88	0.8435
AT3G45850			P-loop containing nucleoside t...		Potri.014G170950 [exp]	28.93	0.7877
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Potri.002G104300 [exp]	31.74	0.8267
AT3G21770			Peroxidase superfamily protein...		Potri.014G135580 [exp]	31.78	0.8326
AT5G51545		LPA2	low psii accumulation2 (.1)		Potri.012G128000 [exp]	34.20	0.8135
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.003G015000 [exp]	36.23	0.7865
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.003G058200 [exp]	40.55	0.8336
AT1G29240			Protein of unknown function (D...		Potri.011G067000 [exp]	46.47	0.8335

Compare expression of checked genes

Potri.016G050400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.