Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42280 295 / 2e-98 bHLH bHLH130 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G51140 178 / 1e-52 bHLH bHLH122 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G35460 137 / 2e-38 bHLH bHLH080 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G43140 136 / 2e-37 bHLH bHLH129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G05805 137 / 4e-37 bHLH bHLH128 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09180 132 / 2e-36 bHLH bHLH081 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G24260 87 / 5e-19 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 85 / 2e-18 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 82 / 1e-17 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G34530 77 / 2e-15 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G057600 [exp] 503 / 2e-180 AT2G42280 278 / 3e-92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G064700 [exp] 228 / 3e-71 AT2G42280 225 / 5e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G207200 [exp] 226 / 1e-70 AT2G42280 221 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G270000 [exp] 209 / 3e-64 AT2G42280 198 / 7e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G017300 [exp] 207 / 1e-63 AT1G51140 237 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G150600 [exp] 151 / 1e-42 AT1G05805 265 / 1e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G231700 [exp] 150 / 2e-42 AT1G05805 274 / 6e-90 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G107500 [exp] 148 / 3e-42 AT1G35460 223 / 1e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G079900 [exp] 145 / 2e-41 AT1G35460 228 / 1e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021023 [exp] 225 / 1e-68 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10015704 [exp] 189 / 8e-57 AT2G42280 194 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031255 [exp] 180 / 1e-55 AT2G42280 172 / 5e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031826 [exp] 182 / 3e-54 AT1G51140 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10037484 [exp] 179 / 6e-53 AT2G42280 191 / 2e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10025518 [exp] 152 / 1e-42 AT1G05805 242 / 2e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10026733 [exp] 131 / 5e-37 AT2G43140 179 / 2e-56 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10023829 [exp] 124 / 6e-32 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10002720 [exp] 86 / 6e-19 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10021846 [exp] 85 / 3e-18 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G050500.1 pacid=42809004 polypeptide=Potri.016G050500.1.p locus=Potri.016G050500 ID=Potri.016G050500.1.v4.1 annot-version=v4.1 ATGCCAATGGATTCAAGTAGTAATAACAACTATCATCAACAAAATCAACCCAGTTCAGGGTTATTGAGATTTCGCTCAGCTCCAAGTTCCCTTCTTGCAA GTTTTAATGACAGCGGAGTTGACAATGATTCTGTTTTGAATTACCAAGAGTTTGAGGATAAATCTGCAGCAAGAGTGAGAGAGGAAGCTGTTAACTATTC AAACTTTCCGCGGAGTTATTCAGGTTTGCCTCCTCATTATCCAAGACAGGGCTCGGCCACAAATTCTTCAGCTATGGATAGTTCATATGGTTTGATTGGT TCAATCTCAATGGGTCATCATGAGCAACTTAAAAGGGTTGATCCAAGTCTAGCTAGGCAGAATAGCTCTCCTGCTGGACTTTTTGGGAACGTTTCTGTTC AAAATGGCTATCCTGGGTGGAATGGTACTAATGGAGAAGCAAATTCAAGATTGAAGAGTCAACTTAGCCTCTCATCAAGAGCACCTTCTTCCTTAGGCTT TCGGTCACAGATTTCTGAAATTGGGAGCGAAAGCATTGAGGCAGGCAGCCCTAGTGCTGACAGTCGATTTCATAGCAGTCACGGGTTTCCATATGGTTCT TGGAACAATTCGCATTTGTCAGAGAATTTTAGCAGCATGAAAAGAGATCAAGAAAATGGAAACCTGTTTTCTAATAATGCTCAGAACGGAGAGCTTGGAA ATCGCACTCATGTATTCGCCCATCACTTGAGTTTACCAAAGACTTCAGTTGAAATGGTTGCCATGGAAAAGTTCCTTCATTTGCAAGATTCTGTTCCTTG CAAAATTAGAGCAAAGCGTGGTTGTGCCACTCACCCTCGAAGTATTGCAGAAAGAGTAAGAAGAACTCGGATCAGCGAAAGAATGAGGAAACTACAAGAG CTTGTCCCAAACATGGACAAGCAAACAAACACAGCAGACATGCTAGATTTGGCTGTAGATTACATCAAAGACCTTCAGAAGCAGTACAAGACACTCAGCG ACAACAGAGCCAACTGCAAGTGTTTAAGCAAGCAGAAACCAGTGCAAAACAAAATTGTTTGA
AA sequence Show only first row Show all	>Potri.016G050500.1 pacid=42809004 polypeptide=Potri.016G050500.1.p locus=Potri.016G050500 ID=Potri.016G050500.1.v4.1 annot-version=v4.1 MPMDSSSNNNYHQQNQPSSGLLRFRSAPSSLLASFNDSGVDNDSVLNYQEFEDKSAARVREEAVNYSNFPRSYSGLPPHYPRQGSATNSSAMDSSYGLIG SISMGHHEQLKRVDPSLARQNSSPAGLFGNVSVQNGYPGWNGTNGEANSRLKSQLSLSSRAPSSLGFRSQISEIGSESIEAGSPSADSRFHSSHGFPYGS WNNSHLSENFSSMKRDQENGNLFSNNAQNGELGNRTHVFAHHLSLPKTSVEMVAMEKFLHLQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQE LVPNMDKQTNTADMLDLAVDYIKDLQKQYKTLSDNRANCKCLSKQKPVQNKIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.016G050500 [exp]	0	1
					Potri.010G104000 [exp]	4.00	0.7860
AT1G80880			Tetratricopeptide repeat (TPR)...		Potri.001G043500 [exp]	4.79	0.8247
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Potri.006G233800 [exp]	9.79	0.7756	ELF3.3
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Potri.002G129166 [exp]	10.39	0.7729
					Potri.004G206650 [exp]	15.32	0.7805
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.001G273100 [exp]	17.05	0.7896
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.002G226600 [exp]	19.49	0.7304	NFR1.1
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Potri.013G068300 [exp]	22.20	0.7558	ZIGA4.1
					Potri.018G020301 [exp]	27.49	0.7309
AT1G61850			phospholipases;galactolipases ...		Potri.011G000200 [exp]	29.93	0.7566

Compare expression of checked genes

Potri.016G050500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.