Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57830 713 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 649 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 439 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 330 / 2e-103 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 236 / 3e-68 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 222 / 1e-63 Leucine-rich repeat protein kinase family protein (.1.2) AT1G66830 209 / 1e-58 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 208 / 1e-58 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 208 / 2e-58 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 198 / 7e-55 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G057500 [exp] 980 / 0 AT3G57830 707 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 443 / 5e-146 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 342 / 3e-108 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 309 / 1e-95 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 307 / 7e-95 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 230 / 5e-66 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 221 / 8e-63 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G091000 [exp] 216 / 8e-60 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G117500 [exp] 196 / 5e-53 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021022 [exp] 610 / 0 AT3G57830 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023830 [exp] 390 / 2e-131 AT3G57830 382 / 7e-129 Leucine-rich repeat protein kinase family protein (.1) Lus10023831 [exp] 350 / 2e-114 AT3G57830 431 / 8e-146 Leucine-rich repeat protein kinase family protein (.1) Lus10017611 [exp] 343 / 2e-108 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 327 / 3e-102 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 290 / 2e-88 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015799 [exp] 290 / 8e-88 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 227 / 1e-65 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033104 [exp] 225 / 7e-65 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027568 [exp] 218 / 4e-62 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G050800.1 pacid=42808955 polypeptide=Potri.016G050800.1.p locus=Potri.016G050800 ID=Potri.016G050800.1.v4.1 annot-version=v4.1 ATGGCCGTAATCCCTTTCAAAGTCACAGCCTGTCTCATTCTATTTACCTTCACTAACCTTCCACTCCTGTCCTCTCTAAACACTGATGGCCTAGCTCTCC TAGCCCTCAAAGCCGCAATCACTGCTGACCCGACGGACACTTTAGCGTCTTGGTCGGAAACTGACCCAACCCCATGTCACTGGCATGGTATCACTTGCAT TAACGACAGAGTCACTTCTCTTTCACTCCCTGACAAAAACTTCACTGGTTACATACCCTTTGAACTCGGCCTTCTTGGCTCGCTAACTCGACTCACTCTC TCTCGCAACAACTTCTCTAAATCCATACCTTCACATCTCTTCAACGCAACAACTCTCCGCTTTCTTGATTTGTCTCATAATTCTCTCTCAGGTCCAATTC CTGCCAATGTTGTATCTTTAGAAGCCTTAACCCACTTGGATTTATCTTCTAATTGTCTAAATGGGTCTCTCCCTGCATCTTTGAATAAGCTAAAAAGCTT AACAGGAGCTTTAAATTTGTCATACAATTCATTTTCTGGTGAGATTCCAGGGTCTTATGGGTTCTTTCCAGTAATGGTGAGTTTAGATTTAAGACACAAT AATCTTAGTGGCAAAGTGCCTTTATTTGGGTCGTTAGTGAACCAAGGGCCTACTGCATTTGCAGGAAACCCAAGTCTTTGTGGGTTTCCTTTACAAACTG CATGTCCTGAAGCTGTTAATATCACAGTTAGTGATAATCCCGAGAACCCGAAAGACCCAAATCCTGTTCTTTTTCCTGGGAGTGTTGGGAAAGTGAAAGT CAAAACAGGGTCAGTTGCAGTTCCCTTAATTTCGGGCTTCTCGGTGGTGATCGGTGTTGTTACAGTATCCGTGTGGCTGTATCGGAAAAAACGGAGGGCA GATGAGGGTAAAATGGGAAAAGAGGAAAAGATCGAGAAGGGTGACAATAATGAGGTGACTTTTAACGAGGAGGAGCAAAAGGGTAAATTTGTGGTGATGG ATGAAGGGTTTAATATGGAATTAGAGGATTTGTTGAGGGCATCTGCGTATGTGGTGGGGAAGAGTAGGAGTGGCATAGTGTACAAGGTGGTCGTGGGTGG GGGTGGGTCTGGTACGGCGATGCCTACGGTTGTTGCTGTGAGGAGGCTTAGTGAAGGTGATGCCACATGGAAGTTGAAGGAGTTTGAGTCTGAGGTTGAA GCAATTGAGAGGGTCCATCATCCTAATATTGCAAGGCTGAGAGCTTATTACTTTGCTCATGATGAGAAGTTGCTGGTCTCTGATTTTATCCGCAATGGAA GCCTGTACTCTGCTCTGCATGGAGGACCCTCTAACACTTTGCCAGTGCTATCATGGACGGCAAGGTTGAAAATTGCTCAAGGAACTGCTAGGGGTTTAAT GTACATACATGAGCATAGCCCTCGAAAGTACGTTCATGGCAACTTAAAATCAACAAAAATTCTGCTTGACGATGAACTCCAGCCTTACATCTCTAGTTTT GGGCTCACTCGTCTTGTTTGGAATAGCTCAAAATTCGCAACTTCAGCATCGAAAAAGCAGTATCTAAACCAAACCATTTCCTCTGCAATGGGCTTGAAAA TCTCAGCGCCGTCCAACATTTACTTGGCACCAGAAGCTCGAGTCTCTGGCAGCAAGTTCTCTCAGAAATGCGATGTGTACTCATTTGGAATTGTACTGAT GGAACTTTTAACTGGTCGGCTACCTGGTGCAGGATCAGAAAATGATGGTGAAGGACTAGAGAGTCTGGTGAGGAAGGTCTTTCAAGAGGAACGACCCTTG TCTGAGATTATAGACCCGGCACTCTTAAGTGAGGTTCATGCAAAGAAACAGGTCATCGCAGTGTTTCATATTTCACTCAATTGCACTGAACTAGACCCCG AGTTGCGTCCTAGGATGAGAACTGTGTCTGAGAGTCTTGACCGCATCAAATTGCATTGA
AA sequence Show only first row Show all	>Potri.016G050800.1 pacid=42808955 polypeptide=Potri.016G050800.1.p locus=Potri.016G050800 ID=Potri.016G050800.1.v4.1 annot-version=v4.1 MAVIPFKVTACLILFTFTNLPLLSSLNTDGLALLALKAAITADPTDTLASWSETDPTPCHWHGITCINDRVTSLSLPDKNFTGYIPFELGLLGSLTRLTL SRNNFSKSIPSHLFNATTLRFLDLSHNSLSGPIPANVVSLEALTHLDLSSNCLNGSLPASLNKLKSLTGALNLSYNSFSGEIPGSYGFFPVMVSLDLRHN NLSGKVPLFGSLVNQGPTAFAGNPSLCGFPLQTACPEAVNITVSDNPENPKDPNPVLFPGSVGKVKVKTGSVAVPLISGFSVVIGVVTVSVWLYRKKRRA DEGKMGKEEKIEKGDNNEVTFNEEEQKGKFVVMDEGFNMELEDLLRASAYVVGKSRSGIVYKVVVGGGGSGTAMPTVVAVRRLSEGDATWKLKEFESEVE AIERVHHPNIARLRAYYFAHDEKLLVSDFIRNGSLYSALHGGPSNTLPVLSWTARLKIAQGTARGLMYIHEHSPRKYVHGNLKSTKILLDDELQPYISSF GLTRLVWNSSKFATSASKKQYLNQTISSAMGLKISAPSNIYLAPEARVSGSKFSQKCDVYSFGIVLMELLTGRLPGAGSENDGEGLESLVRKVFQEERPL SEIIDPALLSEVHAKKQVIAVFHISLNCTELDPELRPRMRTVSESLDRIKLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57830			Leucine-rich repeat protein ki...		Potri.016G050800 [exp]	0	1
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.008G038450 [exp]	1.41	0.9308
AT4G02010			Protein kinase superfamily pro...		Potri.002G194850 [exp]	2.44	0.9343
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Potri.003G183000 [exp]	2.64	0.9190
AT1G24764		ATMAP70-2	microtubule-associated protein...		Potri.006G039200 [exp]	2.82	0.9222
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Potri.008G094200 [exp]	4.24	0.9167	Pt-HIUHASE.1
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Potri.017G095200 [exp]	5.19	0.9276
AT1G24480			S-adenosyl-L-methionine-depend...		Potri.010G052100 [exp]	5.47	0.9094
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Potri.004G218500 [exp]	8.83	0.9108	MLO4.1
AT4G01897			unknown protein		Potri.002G191200 [exp]	8.94	0.9028
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Potri.018G064900 [exp]	10.90	0.9063

Compare expression of checked genes

Potri.016G050800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.