Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57790 640 / 0 Pectin lyase-like superfamily protein (.1) AT3G42950 107 / 9e-25 Pectin lyase-like superfamily protein (.1) AT4G33440 101 / 6e-23 Pectin lyase-like superfamily protein (.1) AT1G19170 94 / 2e-20 Pectin lyase-like superfamily protein (.1) AT2G23900 94 / 2e-20 Pectin lyase-like superfamily protein (.1) AT5G41870 93 / 3e-20 Pectin lyase-like superfamily protein (.1) AT4G23820 93 / 4e-20 Pectin lyase-like superfamily protein (.1) AT3G48950 91 / 2e-19 Pectin lyase-like superfamily protein (.1) AT3G62110 91 / 3e-19 Pectin lyase-like superfamily protein (.1) AT5G49215 75 / 3e-14 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G057100 [exp] 120 / 5e-33 AT3G57790 102 / 5e-27 Pectin lyase-like superfamily protein (.1) Potri.006G139500 [exp] 103 / 2e-23 AT3G42950 786 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 100 / 1e-22 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.018G062700 [exp] 98 / 9e-22 AT1G19170 789 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 95 / 7e-21 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 94 / 2e-20 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.005G063400 [exp] 91 / 2e-19 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 91 / 2e-19 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 89 / 1e-18 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026318 [exp] 675 / 0 AT3G57790 669 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10042350 [exp] 533 / 0 AT3G57790 523 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039909 [exp] 100 / 2e-22 AT1G19170 775 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 100 / 3e-22 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 93 / 6e-20 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 92 / 1e-19 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023101 [exp] 90 / 4e-19 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 88 / 1e-18 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027516 [exp] 85 / 2e-17 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039279 [exp] 81 / 3e-16 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.016G051200.1 pacid=42809584 polypeptide=Potri.016G051200.1.p locus=Potri.016G051200 ID=Potri.016G051200.1.v4.1 annot-version=v4.1 ATGACCACTCCAATTCTCCAATTAATCTTCCTTTTAATCCTCTCCCCTCTCCGCCAATTACCCCCCTCCAAACCAGCAACCCCCACCAGAATCCAACTCC CCCACCCAACTCCCACCACCCTCTCCGTCACCGACTTCGGTGCCATCGGAGACGGCATCCACTACGACACAGAAGCCATTCAATCAACCATTAACTCCTG TCCCACCACCCCACCAACCAAAGCATGTCACGTCAACTTCCCACCTGGGATCTACCTAACAGCAACCATCCACTTAAAATCCAACGTTGTTCTAAACATC CAAGAAGGAGCAACCTTGCTAGGCGGCACAAAACTGGAGGACTACCCAAAAGAGTTTAACAGATGGTATGTTGTTTTAGCAGAGAACGCGAGTGATGTAG GGATAACTGGAGGTGGGGTTGTTGATGGTCAAGGATTGAAGTTTGTTAAGAGGTTTAATGAGAGAAAGAATGTGATGGTGAGTTGGAATTCTACTGGGGC TTGCTTGGGTGATGAGTGTAGGCCAAGACTGGTTGGCTTCATTGGATGTACAAACGTCAAGGTTTGGAATGTTAGGTTAAGTGAGCCAGCTTATTGGTGT TTGCACATAGTACAGTGCCTTAATACACACATTTCTGACGTTTCCATATATGGTGACTTTAATTCACCTAATAATGATGGGATAGATATAGAGGATTCTA ATAATACACTTATTACAAGATGTCATATCGACACCGGAGATGATGCTATTTGTCCGAAGACATACACCGGTCCGATTTATAATTTGACTGCTACAGACTG TTGGATTCGAACAAAATCTTCAGCGATCAAGCTTGGTAGTGCTAGCTGGTTTGAGTTCAAGGGTCTGGTGTTTGACAATATCACTATTGTAGATTCTCAT AGAGGATTGGGACTGCAGATACGTGATGGAGGAAATGTAAGTGACATCACCTTCTCAAACATAAATATTAGCACAAGATACTATGATCCATCATGGTGGG GTAGAGCAGAGCCTATTTATGTGACAACCTGTCCGCGACACTCAAGTTCAAAAGAGGGCTCAATATCTAATCTACAATTCATCAACATAACGACGAATTC TGAAAATGGTGTATTCTTGTCAGGCTCTAAAGGTGGCCTGCTGAGCAATCTGAGATTCATCAACATGAATCTGACTTTCAGAAGATGGACAACTTATCCA GGTGGCTTGGTAGACTACAGACCTGGATGCCAGGGTCTTGTTAATCACAGTGCAGCCGGGATTATCATGGAACATATCGAGGGCTTCGAGGTTGAGAACG TAAATATGAGATGGTCTGATTATCAAAATGAGCCGTGGGATAATCCCTTGGATTTCAGACCTTCGACTGTGAATAACATTTCTTTTCTCAATTTCCATTC TGCTTTGTATAAACAAATGAAATAG
AA sequence Show only first row Show all	>Potri.016G051200.1 pacid=42809584 polypeptide=Potri.016G051200.1.p locus=Potri.016G051200 ID=Potri.016G051200.1.v4.1 annot-version=v4.1 MTTPILQLIFLLILSPLRQLPPSKPATPTRIQLPHPTPTTLSVTDFGAIGDGIHYDTEAIQSTINSCPTTPPTKACHVNFPPGIYLTATIHLKSNVVLNI QEGATLLGGTKLEDYPKEFNRWYVVLAENASDVGITGGGVVDGQGLKFVKRFNERKNVMVSWNSTGACLGDECRPRLVGFIGCTNVKVWNVRLSEPAYWC LHIVQCLNTHISDVSIYGDFNSPNNDGIDIEDSNNTLITRCHIDTGDDAICPKTYTGPIYNLTATDCWIRTKSSAIKLGSASWFEFKGLVFDNITIVDSH RGLGLQIRDGGNVSDITFSNINISTRYYDPSWWGRAEPIYVTTCPRHSSSKEGSISNLQFINITTNSENGVFLSGSKGGLLSNLRFINMNLTFRRWTTYP GGLVDYRPGCQGLVNHSAAGIIMEHIEGFEVENVNMRWSDYQNEPWDNPLDFRPSTVNNISFLNFHSALYKQMK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57790			Pectin lyase-like superfamily ...		Potri.016G051200 [exp]	0	1
AT2G24420			DNA repair ATPase-related (.1....		Potri.018G003700 [exp]	12.64	0.6133
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.004G216900 [exp]	30.74	0.5552
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.019G051500 [exp]	54.69	0.5319
AT1G22790			unknown protein		Potri.005G196300 [exp]	66.63	0.5388
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.001G450900 [exp]	68.37	0.5501
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Potri.009G059400 [exp]	87.63	0.5177
AT5G45580	GARP		Homeodomain-like superfamily p...		Potri.003G100100 [exp]	118.84	0.4953
AT1G23780			F-box family protein (.1)		Potri.005G109700 [exp]	187.27	0.4656
AT1G65720			unknown protein		Potri.004G078500 [exp]	189.98	0.4787
AT3G56740			Ubiquitin-associated (UBA) pro...		Potri.006G040100 [exp]	280.97	0.4652

Compare expression of checked genes

Potri.016G051200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.