Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13770 908 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 473 / 2e-159 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 469 / 4e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 473 / 1e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 464 / 4e-156 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 461 / 6e-155 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 461 / 4e-153 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G68930 458 / 1e-152 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G57430 462 / 2e-152 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 457 / 9e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208000 [exp] 485 / 8e-164 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 478 / 2e-162 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G037600 [exp] 479 / 7e-162 AT3G46790 997 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 491 / 1e-161 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 479 / 3e-161 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 481 / 9e-161 AT3G22690 582 / 0.0 unknown protein Potri.015G095100 [exp] 476 / 6e-160 AT5G50390 865 / 0.0 EMBRYO DEFECTIVE 3141, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G184800 [exp] 480 / 2e-159 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 471 / 2e-159 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040504 [exp] 962 / 0 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 481 / 2e-162 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 475 / 7e-160 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 478 / 2e-158 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 456 / 4e-153 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 457 / 8e-153 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 461 / 2e-152 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 460 / 1e-151 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 455 / 2e-151 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 455 / 2e-150 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.016G051300.1 pacid=42810558 polypeptide=Potri.016G051300.1.p locus=Potri.016G051300 ID=Potri.016G051300.1.v4.1 annot-version=v4.1 ATGAAATTGCTCTCATACATCGACTTGTTTCTCCACTGTCCTAAACATGCAAACGCTTCTATCCTTTACCAATTTACTCGCCAGCTAACAACCCTCTCTT CCTTCCTGCCAACTAAACCAACTAATTTAAATGTTCTATGCACTAAAGGCCAACTGCAAAGGGCACTACTAGAAATGGCAATTCAAGGTCCTGAAATTAA GTTTGATGGGTACAACATGCTGCTAAACGAGTGTGTCAATAAAAGGGCTGTTAGAGAAGGCCAAAGGGTACATGCCCACATGATCAAAACATGTTATTTA CCACCCGTGTATTTAAGTACTAGGTTGATTATCTTATACACGAAGTGTGAGTGTTTGGGTTGTGCAAGACATGTGTTTGATGAAATGCGTGAGAGAAATG TTGTTTCTTGGACTGCAATGATTTCGGGTTATTCTCAAAGAGGGTTTGCATCTGAGGCATTGCATCTTTTTGTACAGATGTTAAGATCAGATACGGAGCC AAATGAGTTCACTTTCGCTACTGTGCTCTCCTCTTGTACAGGTTTTTCAGGGTTTGAGCTGGGAAGGCAAATTCATTCTCACATATTCAAGAGAAACTAT GAAAACCATATATTTGTTGGGAGCTCACTTCTTGACATGTATGCCAAGGCTGGTAGAATCCATGAAGCTCGAGGAGTTTTTGAATGCTTGCCTGAAAGAG ATGTTGTCTCCTGTACTGCAATAATCTCAGGCTATGCTCAATTAGGCCTTGATGAAGAGGCATTAGAACTATTCTGCCGGTTACAAAGGGAAGGAATGAG TTCAAATTATGTTACCTATGCCAGTTTGTTGACTGCACTGTCTGGGCTTGCTGCACTGGATCATGGCAAACAAGTTCACAGCCATGTGCTCAGATGTGAA TTGCCCTTTTATGTAGTTCTCCAGAATTCACTGATTGATATGTACTCAAAATGTGGAAACCTTAATTACGCAAGAAAGATCTTTAATAACATGCCTGTGA GAACTGTTATTTCATGGAATGCAATGCTTGTGGGATATAGTAAGCATGGTAAGGGGATAGAGGTGGTTAAACTTTTCAAATTAATGAGAGAAGAAAATAA AGTCAAACCTGACAGTGTCACTTTTCTGGCTGTTCTATCTGGCTGCAGCCATGGAGGATTGGAAGATAAGGGGCTGGAAATGTTTGATGAGATGATGAAT GGGGGTGATGAGATAGAAGCAGGGATTGAACATTATGGGTGTGTCATTGACTTGCTTGGGCGTGCTGGCCGAGTAGAAGAGGCTTTTGAATTGATCAAAA AGATGCCTTTTGAACCTACCGCTGCTATTTGGGGTTCACTTTTAGGAGCTTGCAGAGTTCATTCAAATACTAATATTGGTGAATTTGTGGGTTGCCGTCT TTTGGAAATAGAGCCTGAAAATGCTGGGAATTATGTCATTCTCTCAAATTTATATGCCTCTGCAGGGAGGTGGGAAGATGTGAGAAATGTAAGGGAATTG ATGATGGAGAAAGCTGTGATAAAGGAGCCTGGAAGAAGCTGGATTGAACTTGACCAAACCATCCATACCTTTTACGCAAGTGATCGGTCCCATCCTAGGA GAGAAGAGGTATTTTTGAAGGTAAGGGAATTATTGGTGAAATTCAAGGAATCTGGCTATGTTCCTGACCAGAGTTGTGTTTTATACGATGTGGATGAAGA GCAAAAGGAGAAAATACTTCTAGGCCATAGTGAGAAGCTGGCTTTGGCTTTTGGACTAATTTCTACTTCTGAGGGAGTCCCGCTCCGAGTAATAAAAAAC CTCCGGATTTGTGTTGATTGTCACAATTTTGCCAAATTTGTATCGAAGGTTTATGGAAGACAAGTGTCTATAAGGGATAAAAACCGGTTCCACCATGTTG CTGGGGGAATTTGTTCTTGTGGCGACTATTGGTGA
AA sequence Show only first row Show all	>Potri.016G051300.1 pacid=42810558 polypeptide=Potri.016G051300.1.p locus=Potri.016G051300 ID=Potri.016G051300.1.v4.1 annot-version=v4.1 MKLLSYIDLFLHCPKHANASILYQFTRQLTTLSSFLPTKPTNLNVLCTKGQLQRALLEMAIQGPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYL PPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNY ENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCE LPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMN GGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVREL MMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKN LRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13770			Pentatricopeptide repeat (PPR)...		Potri.016G051300 [exp]	0	1
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Potri.002G201500 [exp]	10.39	0.5996	ERS1.1,ETR1
AT4G01320		ATSTE24	Peptidase family M48 family pr...		Potri.014G088900 [exp]	25.19	0.5943	ATSTE24.1
AT3G59900		ARGOS	auxin-regulated gene involved ...		Potri.007G146401 [exp]	31.49	0.5759
AT5G41761			unknown protein		Potri.012G031900 [exp]	121.41	0.5300
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Potri.001G455000 [exp]	137.84	0.5284
AT1G62420			Protein of unknown function (D...		Potri.011G023301 [exp]	150.78	0.5094
AT5G24010			Protein kinase superfamily pro...		Potri.017G143049 [exp]	160.36	0.5137
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Potri.006G229900 [exp]	203.77	0.5168

Compare expression of checked genes

Potri.016G051300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.