Plant FIBer expression Database

Potri.016G051500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42320 645 / 0 nucleolar protein gar2-related (.1.2)
AT3G57780 603 / 0 unknown protein
AT5G06930 486 / 3e-161 unknown protein
AT3G01810 455 / 4e-147 unknown protein
AT5G43230 407 / 2e-129 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G056800
[exp]
1173 / 0 AT2G42320 618 / 0.0 nucleolar protein gar2-related (.1.2)
Potri.010G057700
[exp]
493 / 1e-162 AT5G43230 560 / 0.0 unknown protein
Potri.008G177500
[exp]
489 / 2e-158 AT5G43230 565 / 0.0 unknown protein
Potri.001G333200
[exp]
487 / 3e-158 AT3G01810 652 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011304
[exp]
807 / 0 AT2G42320 688 / 0.0 nucleolar protein gar2-related (.1.2)
Lus10040502
[exp]
807 / 0 AT2G42320 685 / 0.0 nucleolar protein gar2-related (.1.2)
Lus10041590
[exp]
464 / 1e-149 AT3G01810 603 / 0.0 unknown protein
Lus10037001
[exp]
464 / 5e-149 AT3G01810 583 / 0.0 unknown protein
Lus10022341
[exp]
462 / 1e-148 AT3G01810 605 / 0.0 unknown protein
Lus10015804
[exp]
295 / 6e-93 AT5G43230 371 / 2e-122 unknown protein
Lus10015805
[exp]
102 / 4e-22 AT3G01810 160 / 5e-41 unknown protein
PFAM info
Representative CDS sequence
>Potri.016G051500.4 pacid=42810158 polypeptide=Potri.016G051500.4.p locus=Potri.016G051500 ID=Potri.016G051500.4.v4.1 annot-version=v4.1
ATGAAAGAGAGTGACAAGAGAAGAACTCCCGGTAATAATCAGTCGAAGCGCTCGGGAAAAACTGAACGGAGAGACCGTAAACCGAATCAAACGACGAAGG
GGATTGAATCTAAATCCTTGCATGCTATACCAGACTCCTCCAGTGCTATTTTAGTAAGTGATTCGAACACGGGCTCAGAGCCCTCTGAAGTTTGTGATAG
CTTTGTTATACATTATATGGATAATGTCAACAGGTCTGAGGAGGCTCCTCAAGATTCAAAAGCCGATTCCATGATTGCCAAAGTGAACAAGGATGAGGCT
TCAGATGACTATTCTGATGACTTAGATAGAGAAGCTAAGGAGGGGAAGGAAGATGAGTCGGATTCTGAGACAACACAAGATTCTGTATCATCTCAAGGGG
ATTCGGTGACAGCTGAGGGTGAGAAAGTAGAAAACGTTTCGATAGTCCCAAAAACAGTTTCCAATAAGAATTTATCAGAAAGCGGTCCCCCGCGTGGATC
AAGGGTGAAATCTGATCGCAACACTAGTATATCTAGGTCTAAAGCAGTAAATAACACTCCTAAAAAACCTGCAAAAACAAATAAAGGGCCTTTGAAAGTT
ACTTCGAAAAGTTCTTTTGGTAAGAATTCTAAAGACATGAGAGTTCCTCCTAAACCTTCATTAGAATCTTCTGAAGGAGTTGATGATAAGCCTGCAGAAG
ATGTCAAAGAAATAGATTTTTTAGATGAGGCCACAAATGGTACTCAGACTCAGAGTGTTGCAATTGACAACGTAACAGATGGTGCTGAAGAAAATGGTGA
ACATGAGGATGAAGCAGAATTAAATCAAAGGATTGAAGACATGGAAATGAGAATCGGGAAACTTGAAGCAGAGCTCAGAGAAGTTGCTGCTCTTGAAATT
TCACTTTATTCTGTAGTCCCAGAACATGGGAGCTCAGCACATAAGGTGCACACACCTGCAAGACGCCTTTCCAGACTCTACATTCATGCTTGCAAGCATT
GGACTCTAGTTAAGCGAGCTACGGTTGCCAGAAACACTGTTTCTGGACTTGTATTGATTTCCAAGTCCTGCGGTAATGATGTTCCAAGGTTAACATTTTG
GTTGTCCAACACAATTGTGCTGAGAGAGATCATTTCTCAGGCATTTGGAAGTTCACGGCACTCAAGTCCCCTTGCAAGGCTTGCTGAGTCCAATGGGGGT
AGCAAGAAAAGTGAAGGGAAGCCTACAGCACTGAAATGGAAGGGTGGTTCTGGTAGCAAACAAGTTAACGGTTTTATGCAGTTTGCTGATGATTGGCAGG
AGACAGGAACCTTTACTGCTGCATTAGAAAGAGTTGAATCATGGATATTTTCCCGTGTAGTTGAATCTGTATGGTGGCAGGCTTTGACTCCACATATGCA
ATCTCCTACTGGGGATTTGTCCTCCAATAAAACCACTGGAAGGTTGCATGGACCAGCCTTGGGTGACCAGCAGCAAGGCAGCTTTTCTATCAACTTATGG
AAGAACGCTTTCCAGGATGCTCTCCAACGACTATGTCCTGTTAGAGCAGGAGGTCATGAGTGTGGTTGCTTGCCCATCATTGCAAGAATGGTTATGGAAC
AGTGTGTTGCCAGGCTAGATGTAGCAATGTTCAATGCTATTCTGCGCGAGTCTGCCCATGAGATTCCAACTGACCCTGTTTCGGATCCTATCTTAGATTC
CAAGGTTCTGCCAATTCCTGCTGGAGACTTGAGCTTTGGTTCTGGGGCACAACTCAAAAATTCTGTTGGTAATTGGTCTAGGCGGCTTACTGATATGTTT
GGGATCAATGCTGATGATTGCTTGAAAGAAGATCAGCATGGCAGCGAGGATGATGACAAGCAAGATGGTGAAGCTAAACCCTTCCTTCTTCTTAATGACT
TGAGCGATCTTCTGATGCTTCCAAAAGACATGCTAATGGACCGATCAATCAGGAAGGAGGTGTGCCCATCAATTGGTCTTCCCTTAGTTAAGCGGATACT
CTGCAATTTTACTCCTGATGAGTTCTGCCCAGATCCTGTCCCTGGAGCTGTATTGGAGGCATTGAACTCCGAGGGTACCGTGGAGTGGAGATTGTTAGGA
GATGCTGCCAGAAACTTCCCTTATACAGCTGCCCCAGTTGTGTACACACCACCCTCCTCTGCTCATGTGGCAGAAAAAGTTTCAGAGGCAGGGACCGAGT
CTCAGTTGTCCAGGAATGTATCTGCTGTGCAGAGGAAAGGATACACCAGTGACGAGGAGCTGGAGGAATTAGATTCACCTCTTACGTCCATAATTGAAAG
ATTGCCATCATCCCCAGCTATCATCATGGCCAATGGAAATGGAAAACACAAGGAATATGCAACAGCAGGGGATTCGATGGCAAATGCAAGGTATGAACTT
CTTCGTGAGGTCTGGTCTGCATGA
AA sequence
>Potri.016G051500.4 pacid=42810158 polypeptide=Potri.016G051500.4.p locus=Potri.016G051500 ID=Potri.016G051500.4.v4.1 annot-version=v4.1
MKESDKRRTPGNNQSKRSGKTERRDRKPNQTTKGIESKSLHAIPDSSSAILVSDSNTGSEPSEVCDSFVIHYMDNVNRSEEAPQDSKADSMIAKVNKDEA
SDDYSDDLDREAKEGKEDESDSETTQDSVSSQGDSVTAEGEKVENVSIVPKTVSNKNLSESGPPRGSRVKSDRNTSISRSKAVNNTPKKPAKTNKGPLKV
TSKSSFGKNSKDMRVPPKPSLESSEGVDDKPAEDVKEIDFLDEATNGTQTQSVAIDNVTDGAEENGEHEDEAELNQRIEDMEMRIGKLEAELREVAALEI
SLYSVVPEHGSSAHKVHTPARRLSRLYIHACKHWTLVKRATVARNTVSGLVLISKSCGNDVPRLTFWLSNTIVLREIISQAFGSSRHSSPLARLAESNGG
SKKSEGKPTALKWKGGSGSKQVNGFMQFADDWQETGTFTAALERVESWIFSRVVESVWWQALTPHMQSPTGDLSSNKTTGRLHGPALGDQQQGSFSINLW
KNAFQDALQRLCPVRAGGHECGCLPIIARMVMEQCVARLDVAMFNAILRESAHEIPTDPVSDPILDSKVLPIPAGDLSFGSGAQLKNSVGNWSRRLTDMF
GINADDCLKEDQHGSEDDDKQDGEAKPFLLLNDLSDLLMLPKDMLMDRSIRKEVCPSIGLPLVKRILCNFTPDEFCPDPVPGAVLEALNSEGTVEWRLLG
DAARNFPYTAAPVVYTPPSSAHVAEKVSEAGTESQLSRNVSAVQRKGYTSDEELEELDSPLTSIIERLPSSPAIIMANGNGKHKEYATAGDSMANARYEL
LREVWSA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G42320 nucleolar protein gar2-related... Potri.016G051500
[exp]
0 1
AT2G26110 Protein of unknown function (D... Potri.001G008160
[exp]
1.41 0.9052
Potri.019G038310
[exp]
3.16 0.8823
AT5G43230 unknown protein Potri.010G057700
[exp]
4.00 0.8633
AT3G21550 AtDMP2 Arabidopsis thaliana DUF679 do... Potri.008G115100
[exp]
6.70 0.8620
AT5G57090 MM31, ATPIN2, A... WAVY ROOTS 6, ETHYLENE INSENSI... Potri.001G205200
[exp]
7.41 0.8736 Pt-PIN2.1,PIN10
AT1G11910 ATAPA1, APA1 aspartic proteinase A1 (.1) Potri.004G007600
[exp]
9.59 0.8762
AT3G60130 BGLU16 beta glucosidase 16 (.1.2.3) Potri.001G226200
[exp]
12.96 0.8535 Pt-PLIN-GEN.19
AT3G08650 ZIP metal ion transporter fami... Potri.006G111200
[exp]
13.85 0.8300
AT1G12740 CYP87A2 "cytochrome P450, family 87, s... Potri.001G270800
[exp]
15.81 0.8390
AT3G22600 Bifunctional inhibitor/lipid-t... Potri.002G050500
[exp]
16.70 0.8312

Potri.016G051500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.