Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06940 977 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G49660 425 / 3e-134 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28650 416 / 2e-130 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G28440 412 / 4e-129 HSL1 HAESA-like 1 (.1) AT4G28490 405 / 2e-126 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 405 / 3e-126 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 398 / 2e-123 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 397 / 4e-123 HSL2 HAESA-like 2 (.1) AT1G08590 393 / 2e-121 Leucine-rich receptor-like protein kinase family protein (.1) AT1G09970 389 / 3e-120 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G056600 [exp] 1494 / 0 AT5G06940 888 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 444 / 9e-141 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G107600 [exp] 423 / 1e-132 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.004G049100 [exp] 417 / 5e-131 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.019G021700 [exp] 416 / 2e-130 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G058100 [exp] 414 / 1e-129 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.013G048800 [exp] 412 / 8e-129 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G111700 [exp] 410 / 8e-128 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G126100 [exp] 404 / 1e-125 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040500 [exp] 1170 / 0 AT5G06940 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10011302 [exp] 1144 / 0 AT5G06940 984 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10000814 [exp] 425 / 1e-133 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 422 / 1e-132 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10013968 [exp] 420 / 1e-131 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 414 / 2e-129 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10025943 [exp] 412 / 5e-129 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10007232 [exp] 408 / 1e-127 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028232 [exp] 406 / 8e-127 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 402 / 9e-125 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G051600.1 pacid=42809092 polypeptide=Potri.016G051600.1.p locus=Potri.016G051600 ID=Potri.016G051600.1.v4.1 annot-version=v4.1 ATGGCTACCACCTGCACATACACTTTTGCTCTCTGTCTTAGCCTCGCATTCTTCATGTGTAGCACAGCAGCATCTTCAACTGAAGCTGATATCCTACTTT CTTTCAAAGACTCCATTCAAGACCCCAAGAACTCTCTTTCAAGCTGGTCTAACAGCTCAAATGCCCATCACTGTAACTGGACTGGAATCACCTGCTCTAC TTCACCTTCACTCACTGTAACTTCTCTCAACCTTCAAAATTTGAATCTTTCTGGTGAAATCTCTTCTTCAATCTGTGATTTAACCAATTTGGGTCTTCTC AATCTTGCTGACAATTTTTTTAACCAGCCTATACCTTTACACCTCTCTCAATGTAGTTCTTTGGAGAGTTTGAATGTCAGTAACAACCTCATCTGGGGTC CTATCCCAGATCAGATTTCTCAGTTTCAGTCTCTGAGAGTTCTTGATTTTAGCAAGAACCATATTGAGGGAAGGATTCCAGAAAGCATTGGCTCATTGGT GAAGTTGCAAGTACTCAACTTGGGAAGCAACTTGCTTTCAGGTAGTGTTCCTTCTGTATTTGTGAATTTCACTGAGCTTGTTGTTCTTGATTTGTCTCAA AATTTGTACTTGATGAGTGGTGTTCCTAGTGAGATTGGGAAACTTGGGAAGCTTGAGCAGCTTTTGTTGCAAAGTTCTGGTTTTTATGGTCAAATTCCTG ATTCTTTTGTGGGTTTGCAAAGTTTAACCATTTTGGACCTCTCACAGAACAATCTAAGTGGTATGATTCCTCAAACACTAGGGTCTTCTTCTAAGAACTT AGTGTCTTTTGATGTTTCTCAAAACAAGCTTTTAGGGTCATTTCCAAATGATATATGCAGCGCACCAGGCCTTAAAAACCTCGGTCTCCACACTAATTTC TTCAATGGTTCGATACCAAACTCCATTAGTGAATGCTCTAATCTTGAGAGGTTTCAAGTTCAAAACAATGAGTTTTCTGGTGATTTCCCAGGTGGGTTAT GGTCACTAAGCAAAATAAAGCTAATTAGAGCTGAGAACAACAGATTTTCTGGTGCAATACCAGATTCAATGTCAATGGCAGCTCAATTGGAGCAAGTTCA GATAGATAACAACAGCTTCACTGGAAAAATTCCCCATGGTCTTGGTCTGGTTAAGAGCTTGTATAGATTCTCTGCATCTCTTAATGGTCTCTATGGTGAA TTACCTCCGAATTTTTGTGATTCTCCTGTTATGAGTATCATAAACTTATCCCACAATTCTCTTTCTGGTCAAATTCCAGAGATGAAAAAGTGCAGGAAAC TGGTCTCCTTGTCTTTGGCAGACAATAGTCTTACTGGGGAAATCCCTCCATCCCTTGCCGATTTGCCTGTGCTGACTTACCTTGATCTTTCTGATAACAA CCTCACTGGTTCAATACCAGAAGGGCTTCAAAATCTGAAGCTTGCTCTCTTCAATGTATCCTTTAACCTTCTATCTGGAGAAGTCCCCCCAGCTCTAGTC TCTGGACTCCCTGCTTCATTCCTGGAAGGAAATCCTCACCTTTGTGGCCCGGGATTGCCCAATTCTTGTTTTGATGATCTGCCAAGACATCGCAATTCTG CTGGTCTTAGTTCATTGGCATGTGCCCTTATATCTATAGCATTTGGTCTGGGAGTCTTGCTTGTTGCTGCTGGGTTTTTCGTGTTCCATCGATCCACTAA ATGGAAATCTGAAATGGGTAGTTGGCATTCGGTGTTTTTCTATCCTCTCAGAGTCACAGAGCATGATTTAGTCATGGGAATGGATGAGAAAAGTTCTGTT GGAAATGGTGGAGCTTTTGGTAGAGTGTACATTATATGTTTACCAAGTGATGAACTGGTTGCCGTGAAGAAGCTTGTCAACATCGGGAACCAATCTCCAA AAGCATTGAAGGCTGAGGTCAAGACATTAGCCAAGATCAGACATAAGAACATCACTAAAGTTCTTGGATTTTGCCATTCAGAGGAATCAATCTTTCTAAT TTACGAATACTTGCAAAAGGGGAGCTTAGGGGATTTAATTAGCAGACCGGACTTTCAGTTGCAATGGAGTGATAGGTTGAAGATTGCCATTGGGGTTGCT CAAGGATTGGCATACCTTCACAAGCATTATGTCCAGCATTTACTTCACAGAAACATAAAGTCGACTAATATCCTCCTGGATGCGGACTTTGAACCAAAGC TCACAGATTTTGCTCTCGACCGAATCGTGGGAGAAGCCTCATTTCAAACAACTGTTGCTTCAGAATCTGCAAACTCTTGCTACAATGCTCCTGAATGTGG ATACACAAAGAAAGCAACCGAGCAAATGGATGTTTACAGCTTCGGTGTGGTGCTTCTAGAGCTGATAGCAGGCCGACAAGCTGACCGAGCAGAACCAGCT GACTCTGTTGATATCGTGAAGTGGGTTCGGAGGAAAATCAACATCACAAATGGAGCTGTCCAAGTTCTTGACTCTAAGATATCAAACTCTTCCCAACAAG AGATGCTAGCAGCTCTAGACATTGCCATTCGTTGCACTTCAGTGCTGCCAGAGAAACGACCATCAATGCTTGAAGTCATTAGAGCACTTCAGTCTCTAGG CCCAAAAACTCACGTTTCAGACTCATACTTGTCCACTCCCGAGGAGAACTCAGTCCCAGTATAA
AA sequence Show only first row Show all	>Potri.016G051600.1 pacid=42809092 polypeptide=Potri.016G051600.1.p locus=Potri.016G051600 ID=Potri.016G051600.1.v4.1 annot-version=v4.1 MATTCTYTFALCLSLAFFMCSTAASSTEADILLSFKDSIQDPKNSLSSWSNSSNAHHCNWTGITCSTSPSLTVTSLNLQNLNLSGEISSSICDLTNLGLL NLADNFFNQPIPLHLSQCSSLESLNVSNNLIWGPIPDQISQFQSLRVLDFSKNHIEGRIPESIGSLVKLQVLNLGSNLLSGSVPSVFVNFTELVVLDLSQ NLYLMSGVPSEIGKLGKLEQLLLQSSGFYGQIPDSFVGLQSLTILDLSQNNLSGMIPQTLGSSSKNLVSFDVSQNKLLGSFPNDICSAPGLKNLGLHTNF FNGSIPNSISECSNLERFQVQNNEFSGDFPGGLWSLSKIKLIRAENNRFSGAIPDSMSMAAQLEQVQIDNNSFTGKIPHGLGLVKSLYRFSASLNGLYGE LPPNFCDSPVMSIINLSHNSLSGQIPEMKKCRKLVSLSLADNSLTGEIPPSLADLPVLTYLDLSDNNLTGSIPEGLQNLKLALFNVSFNLLSGEVPPALV SGLPASFLEGNPHLCGPGLPNSCFDDLPRHRNSAGLSSLACALISIAFGLGVLLVAAGFFVFHRSTKWKSEMGSWHSVFFYPLRVTEHDLVMGMDEKSSV GNGGAFGRVYIICLPSDELVAVKKLVNIGNQSPKALKAEVKTLAKIRHKNITKVLGFCHSEESIFLIYEYLQKGSLGDLISRPDFQLQWSDRLKIAIGVA QGLAYLHKHYVQHLLHRNIKSTNILLDADFEPKLTDFALDRIVGEASFQTTVASESANSCYNAPECGYTKKATEQMDVYSFGVVLLELIAGRQADRAEPA DSVDIVKWVRRKINITNGAVQVLDSKISNSSQQEMLAALDIAIRCTSVLPEKRPSMLEVIRALQSLGPKTHVSDSYLSTPEENSVPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06940			Leucine-rich repeat receptor-l...		Potri.016G051600 [exp]	0	1
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Potri.007G018100 [exp]	2.44	0.9270	Pt-BGAL3.1
AT3G44610			Protein kinase superfamily pro...		Potri.010G236200 [exp]	3.16	0.9434
AT5G01890			Leucine-rich receptor-like pro...		Potri.006G108600 [exp]	4.24	0.9325
AT2G41820			Leucine-rich repeat protein ki...		Potri.016G055400 [exp]	4.47	0.9234
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Potri.008G132700 [exp]	4.69	0.9045	Pt-CEL1.3
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	6.00	0.9283
AT3G56750			unknown protein		Potri.016G035600 [exp]	6.48	0.8927
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Potri.009G055900 [exp]	6.92	0.9257
AT4G13710			Pectin lyase-like superfamily ...		Potri.003G175900 [exp]	6.92	0.9307
AT5G59840			Ras-related small GTP-binding ...		Potri.001G236100 [exp]	7.34	0.9254	Pt-RAB8.2

Compare expression of checked genes

Potri.016G051600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.