Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12170 353 / 2e-123 Chaperone DnaJ-domain superfamily protein (.1) AT5G06910 328 / 2e-113 ATJ6, EMB1393 J-domain protein 6 (.1) AT5G48030 77 / 1e-15 GFA2 gametophytic factor 2 (.1) AT3G62600 75 / 3e-15 ATERDJ3B DNAJ heat shock family protein (.1) AT4G39150 73 / 2e-14 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT2G21510 72 / 4e-14 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G03160 72 / 6e-14 ATP58IPK homolog of mamallian P58IPK (.1) AT1G56300 68 / 6e-14 Chaperone DnaJ-domain superfamily protein (.1) AT1G59980 71 / 2e-13 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT5G01390 69 / 2e-13 DNAJ heat shock family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G056400 [exp] 468 / 3e-168 AT3G12170 370 / 5e-130 Chaperone DnaJ-domain superfamily protein (.1) Potri.009G065500 [exp] 75 / 5e-15 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.014G122600 [exp] 74 / 5e-15 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 73 / 2e-14 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.001G271300 [exp] 73 / 2e-14 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.017G016100 [exp] 70 / 1e-13 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 70 / 2e-13 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.010G013200 [exp] 70 / 2e-13 AT5G49060 327 / 3e-110 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Potri.016G120000 [exp] 70 / 2e-13 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042353 [exp] 382 / 3e-134 AT3G12170 356 / 1e-124 Chaperone DnaJ-domain superfamily protein (.1) Lus10026315 [exp] 378 / 1e-132 AT3G12170 355 / 3e-124 Chaperone DnaJ-domain superfamily protein (.1) Lus10013402 [exp] 364 / 4e-127 AT3G12170 361 / 2e-126 Chaperone DnaJ-domain superfamily protein (.1) Lus10010323 [exp] 356 / 6e-124 AT3G12170 363 / 4e-127 Chaperone DnaJ-domain superfamily protein (.1) Lus10035855 [exp] 81 / 9e-17 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 80 / 1e-16 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10011934 [exp] 80 / 1e-16 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10027634 [exp] 77 / 1e-15 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10022297 [exp] 74 / 1e-14 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10020685 [exp] 69 / 6e-14 AT1G56300 200 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.016G051800.1 pacid=42809459 polypeptide=Potri.016G051800.1.p locus=Potri.016G051800 ID=Potri.016G051800.1.v4.1 annot-version=v4.1 ATGGGAAGGAAGGGAAAGAAACCTAGGGTTTCTCGTGAAGAAGAAGAAGAGATTGAATCCGAAGTAGAAGAGGAACATCAAGAGAATATGAACCAGTCCT CTGCAAATGAGAAGAGTCTCTATGAGGTTCTTGGTGTTGAGAAGACAGCATCTCAACAGGAAATAAAGAAAGCATACTATAAGTTGGCGTTGCGACTCCA TCCTGATAAAAATCCAGGTGACGAGGAAGCTAAGGAGAAATTTCAGCAATTGCAAAAGGTGATATCGATTCTTGGTGACGAGGAAAAAAAGGCGGTCTAT GATCAAACTGGCTGCGTCGATGATACAGATCTTGCAGGGGACGTTGTTCAGAATTTGAAGGATTTTTTCAGAACTTTTTACAAAAAGGTCACTGAAGCTG ATATTGAAGAGTTTGAAGCAAACTACAGGGGATCTGATTCTGAGAAAAAGGATTTGATTGAACTCTATAAGGAGTGCAAGGGTAACATGAGCAGGCTCTT CTGTTCAATGCTTTGCTCTGATCCTAAGCTTGATTCACACCGATTCATGGACATTCTGGATGAGGCAATATCTGCAGGAGAAGTGAAGAGAACCAAAGCT TACCAGAAATGGGCAAAACGAGTGTCTGAAACAAAACCGCCTACCAACCCTTTAAAAAGGAGGGTGAAGTCCAAAAAGGAGCCAGAAGCAGACCTATTTG CAATCATATCTGAGCGCCAAAGTAAGAGGAAGAACCAGGTGAATTCCTTTCTCTCGTCTCTGGAGTCCAAATATGGTGGGAGCAATTCAACTTCAGAACC CACTGAAGAAGAATTTGAAGCAATACAGGAGAAAATAGAAAGCCGCCGTAAGGGCTCCAAGAAGTCGAAGCAAAAGTAA
AA sequence Show only first row Show all	>Potri.016G051800.1 pacid=42809459 polypeptide=Potri.016G051800.1.p locus=Potri.016G051800 ID=Potri.016G051800.1.v4.1 annot-version=v4.1 MGRKGKKPRVSREEEEEIESEVEEEHQENMNQSSANEKSLYEVLGVEKTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKKAVY DQTGCVDDTDLAGDVVQNLKDFFRTFYKKVTEADIEEFEANYRGSDSEKKDLIELYKECKGNMSRLFCSMLCSDPKLDSHRFMDILDEAISAGEVKRTKA YQKWAKRVSETKPPTNPLKRRVKSKKEPEADLFAIISERQSKRKNQVNSFLSSLESKYGGSNSTSEPTEEEFEAIQEKIESRRKGSKKSKQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12170			Chaperone DnaJ-domain superfam...		Potri.016G051800 [exp]	0	1
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Potri.017G081500 [exp]	2.23	0.6829
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Potri.015G010200 [exp]	4.89	0.6185	ACBP1.2
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Potri.010G194300 [exp]	5.74	0.6248	Pt-SYP81.2
AT4G19003		VPS25	E2F/DP family winged-helix DNA...		Potri.001G135700 [exp]	8.12	0.6128
AT1G05430			unknown protein		Potri.010G086300 [exp]	11.13	0.6492
AT3G54970			D-aminoacid aminotransferase-l...		Potri.010G216500 [exp]	11.83	0.6153
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.009G086300 [exp]	14.07	0.5270
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Potri.008G057900 [exp]	24.45	0.5132
AT5G58900	MYB		Homeodomain-like transcription...		Potri.009G042600 [exp]	26.11	0.5391
AT5G51570			SPFH/Band 7/PHB domain-contain...		Potri.015G130600 [exp]	27.03	0.5276

Compare expression of checked genes

Potri.016G051800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.