Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20860 473 / 6e-163 ATNEK5 NIMA-related kinase 5 (.1) AT3G44200 427 / 4e-138 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G12200 410 / 5e-136 ATNEK7 NIMA-related kinase 7 (.1.2) AT3G04810 408 / 5e-135 ATNEK2 NIMA-related kinase 2 (.1.2) AT5G28290 403 / 2e-133 ATNEK3 NIMA-related kinase 3 (.1) AT3G63280 400 / 2e-132 ATNEK4 NIMA-related kinase 4 (.1.2) AT1G54510 396 / 3e-130 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT1G50240 147 / 1e-36 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT3G07980 139 / 6e-34 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT3G13530 137 / 2e-33 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G056300 [exp] 1085 / 0 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.001G018700 [exp] 543 / 0 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 492 / 4e-168 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.001G218100 [exp] 430 / 3e-139 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.009G020100 [exp] 429 / 1e-138 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.002G049400 [exp] 415 / 2e-137 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.005G051600 [exp] 406 / 3e-133 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 400 / 1e-131 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.019G052500 [exp] 143 / 3e-35 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040499 [exp] 631 / 0 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 617 / 0 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10031834 [exp] 431 / 6e-146 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1) Lus10042632 [exp] 417 / 2e-138 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10013338 [exp] 422 / 5e-136 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10001783 [exp] 407 / 1e-134 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10001857 [exp] 418 / 2e-134 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10020244 [exp] 406 / 3e-134 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10015928 [exp] 379 / 2e-123 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10009186 [exp] 379 / 3e-123 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.016G051900.7 pacid=42808978 polypeptide=Potri.016G051900.7.p locus=Potri.016G051900 ID=Potri.016G051900.7.v4.1 annot-version=v4.1 ATGGAGGCAGATACCGGTGAAGTGAAGTCAAAGATGGAAGATTATGAAGTTATAGAGCAGATTGGAAGAGGAGCTTTTGGTTCTGCTTTCCTTGTTCTTC ATAAAACCGAGAAAAAAAAGTATGTGTTGAAGAAGATTCGGTTGGCCAAGCAGACAGAGAAGTTTAAGCGCACAGCTCATCAGGAGATGAATTTGATTGC GAAACTAAACAACCCTTACGTTGTGGAGTACAAGGATTCTTGGGTCGACAAGGGAAACTGTGTATGCATAGTAACAGGCTACTGTGAAGGAGGAGACATG GCTGGGATTATAAAGAAAGCGAGAGGAATATTTTTTCCAGAGGAGAAACTTTGCAAATGGCTGGCTCAGTTGTTGCTAGCTGTGGACTACTTGCATTCTA ACCGTGTCCTTCACAGAGATCTAAAGTGTTCCAACATATTCCTTACAAAGGATAATGATATTCGCCTAGGTGACTTTGGACTTGCAAAGCTGCTCAACAC AGAGGACCTTGCTTCTTCGGTAGTTGGCACTCCTAATTACATGTGTCCTGAGCTCCTAGCAGATATACCTTATGGCTACAAATCTGACATATGGTCCCTT GGATGCTGTATGTTTGAAATTGCAGCACATCAACCAGCATTTAGAGCTCCTGATATGGCTGGACTCATCAACAAAATAAACAGATCCACCATCTCTCCTC TTCCAATTGTGTATTCGTCCTCTCTGAAACAAATTATTAAGAGCATGCTGAGGAAGAACCCAGAACACAGACCAACAGCAGCAGAATTATTGAGGCATCC ACATTTGCAACCACAACTCCTCCGGTGTCGCAATGCATCTTCAGTTTTCCTTCCATTACATTCCATAAACAACTCAAAGGAGAAAACAAGAAGAAAATCA TTGCCTGCTAAACTTAGTGCTGGCAAAGACAACAGTGACAAGGAAGTTGGTGCATCAAAGAGGAAAGAAAATGAACATCCATTTGAGATAAACATGGAAG CACATCGAAGCAATTCACATCAGATTGACAAGCCAACATCAATGTCTAGCACAGATGATAGCCTTGGAAATAAGACAGTTGATCCTACTAGCTGTTCAGT GGAAGTATCTGATGGTCCAAAAGACAGCTCCACTGATTCTGAAACAAGTGTTTGCAATGGAGAGAAGCAAGCAGATTGTAGCAGTCCACCCCAAAAGGAT GGCACTGAAATTGAGTCTACCTCTGAGAGCATTCCAAATTCTCAGCATAAAGAAGAACCCAGTGCCGTGCATTTTCAAAATTTGCAAGAGGTTGATGCCA AAATAGTGACCACAAAGGATCAAGCAGCATTTTGCGGCGGACAAATTCCTGAAGAAGTTCAAACAGAGGGGCAGGGTGATGCAATAGAGGAAACTGGGAA ACCGGAAATTCCTAGCCTAAGTTGTGCTAATCATGATGCTTCCTCTGATGATAAAAGCCCACCATCAGCTGTAAACGAACCTTCTGCAGAGGCACAATGC TGTTCACAGAAACCAGAAAGTCCCGATGTATACACAGAAAGTGCTCATACAGACTACTTGTCATCTGAAAGTAATGATGTGCTTCCATGTAAAAATAAAA TACGCGCAAAACCAGAAAACGACAATTGCTCCACGGAGACACAGAAAGATGATATTCATGCGATGAGTAATGCACAATTGCTGAGGACACTTGCTGCACT AACTGGAGAGGAAACCAAGAGAGAGTGGGAGAATCCAAGTCAACAAAGAGCTGATGCTTTAGAGTCTTTGCTAGAGCTATGTGCACGGCTACTTAAACAA GAAAAAATTGACGAGCTTGCTGGTGTGCTAAAGCCATTCGGAGAAGAAATGGTCTCATCCAGAGAAACAGCAATCTGGTTGACAAAAAGCCTAATGTCTA AAAAAAAAATTAATGGAGGGACCTGA
AA sequence Show only first row Show all	>Potri.016G051900.7 pacid=42808978 polypeptide=Potri.016G051900.7.p locus=Potri.016G051900 ID=Potri.016G051900.7.v4.1 annot-version=v4.1 MEADTGEVKSKMEDYEVIEQIGRGAFGSAFLVLHKTEKKKYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYVVEYKDSWVDKGNCVCIVTGYCEGGDM AGIIKKARGIFFPEEKLCKWLAQLLLAVDYLHSNRVLHRDLKCSNIFLTKDNDIRLGDFGLAKLLNTEDLASSVVGTPNYMCPELLADIPYGYKSDIWSL GCCMFEIAAHQPAFRAPDMAGLINKINRSTISPLPIVYSSSLKQIIKSMLRKNPEHRPTAAELLRHPHLQPQLLRCRNASSVFLPLHSINNSKEKTRRKS LPAKLSAGKDNSDKEVGASKRKENEHPFEINMEAHRSNSHQIDKPTSMSSTDDSLGNKTVDPTSCSVEVSDGPKDSSTDSETSVCNGEKQADCSSPPQKD GTEIESTSESIPNSQHKEEPSAVHFQNLQEVDAKIVTTKDQAAFCGGQIPEEVQTEGQGDAIEETGKPEIPSLSCANHDASSDDKSPPSAVNEPSAEAQC CSQKPESPDVYTESAHTDYLSSESNDVLPCKNKIRAKPENDNCSTETQKDDIHAMSNAQLLRTLAALTGEETKREWENPSQQRADALESLLELCARLLKQ EKIDELAGVLKPFGEEMVSSRETAIWLTKSLMSKKKINGGT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.016G051900 [exp]	0	1
AT5G13890			Family of unknown function (DU...		Potri.010G067000 [exp]	1.41	0.9359
AT2G22560			Kinase interacting (KIP1-like)...		Potri.005G147300 [exp]	2.82	0.9199
AT5G01980			RING/U-box superfamily protein...		Potri.016G141600 [exp]	3.46	0.9253
AT1G22060			unknown protein		Potri.006G120400 [exp]	4.00	0.9321
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Potri.007G107200 [exp]	5.29	0.9239
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.016G085900 [exp]	6.48	0.9077
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.001G403700 [exp]	6.92	0.9062	Pt-CIP7.2
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.006G056300 [exp]	7.74	0.9214
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Potri.002G256600 [exp]	8.66	0.9142	Pt-IAA11.1
AT1G24160			unknown protein		Potri.013G101300 [exp]	9.89	0.8592

Compare expression of checked genes

Potri.016G051900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.