Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42250 511 / 2e-178 CYP712A1 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) AT5G06905 411 / 8e-139 CYP712A2 "cytochrome P450, family 712, subfamily A, polypeptide 2", cytochrome P450, family 712, subfamily A, polypeptide 2 (.1) AT5G06900 391 / 3e-131 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT4G15360 373 / 7e-124 CYP705A3 "cytochrome P450, family 705, subfamily A, polypeptide 3", cytochrome P450, family 705, subfamily A, polypeptide 3 (.1) AT3G20940 370 / 9e-123 CYP705A31P, CYP705A30 "cytochrome P450, family 705, subfamily A, polypeptide 30", cytochrome P450, family 705, subfamily A, polypeptide 30 (.1) AT3G20950 366 / 4e-121 CYP705A32 "cytochrome P450, family 705, subfamily A, polypeptide 32", cytochrome P450, family 705, subfamily A, polypeptide 32 (.1) AT1G50520 362 / 1e-119 CYP705A27 "cytochrome P450, family 705, subfamily A, polypeptide 27", cytochrome P450, family 705, subfamily A, polypeptide 27 (.1) AT1G50560 359 / 2e-118 CYP705A25 "cytochrome P450, family 705, subfamily A, polypeptide 25", cytochrome P450, family 705, subfamily A, polypeptide 25 (.1) AT3G20140 355 / 5e-117 CYP705A23 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1) AT2G14100 355 / 7e-117 CYP705A13 "cytochrome P450, family 705, subfamily A, polypeptide 13", cytochrome P450, family 705, subfamily A, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G190800 [exp] 697 / 0 AT2G42250 509 / 2e-177 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.006G057900 [exp] 576 / 0 AT2G42250 725 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.016G049800 [exp] 479 / 1e-165 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.016G050200 [exp] 442 / 8e-151 AT5G06905 492 / 1e-170 "cytochrome P450, family 712, subfamily A, polypeptide 2", cytochrome P450, family 712, subfamily A, polypeptide 2 (.1) Potri.006G058200 [exp] 438 / 2e-149 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G058100 [exp] 430 / 4e-146 AT5G06905 509 / 3e-177 "cytochrome P450, family 712, subfamily A, polypeptide 2", cytochrome P450, family 712, subfamily A, polypeptide 2 (.1) Potri.001G270900 [exp] 405 / 2e-136 AT5G47990 419 / 2e-142 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.009G065000 [exp] 402 / 2e-135 AT5G47990 425 / 1e-144 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.009G066300 [exp] 382 / 2e-127 AT3G20140 419 / 2e-142 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023827 [exp] 496 / 3e-172 AT2G42250 652 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Lus10035502 [exp] 446 / 1e-152 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10005878 [exp] 367 / 9e-122 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10040868 [exp] 355 / 5e-117 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10013150 [exp] 330 / 3e-107 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10027798 [exp] 316 / 2e-104 AT5G06900 349 / 1e-117 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10008112 [exp] 320 / 3e-103 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10019457 [exp] 312 / 2e-100 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017742 [exp] 307 / 4e-98 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017961 [exp] 303 / 1e-96 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.016G052600.1 pacid=42810489 polypeptide=Potri.016G052600.1.p locus=Potri.016G052600 ID=Potri.016G052600.1.v4.1 annot-version=v4.1 ATGGCCATTATTGATGGTTTTCTGTTTTTTTCCTTCATGGTTTCCATTTGGTTCTTTTGCACTTTCATTCTCAAATCCCTAAAGAATCACACGAGTTCTG GAACCAAAATTCGACACCCACCAAGTCCTCCAGCTTTACCTATCATCGGCCACCTCCATTTACTAGGCTCAGTTTTGGGAACTTCCTTGCATAGTCTAGC TCAACGCTATGGTCCATTTATTCAGCTTCGTATGGGTGTATCGACATGCTATGTTGTTTCTGATGCTGAAATTGCCAAAGAGGTCTTGAAAACTAATGAG ATGAATTTTGTTTCCCGCCTGCAATTCGACACCACAGATTGCAACATATATGAGGGATCTGGATTTATCACTGCACCCTACAACGCATATTGGCGGTTCA TGAAGAAGTTGTGCATGACCAGACTTCTCAATACTTCTCAGATTAATCAGCTTGTGCATCTCAGGGAGGATGAGATGAAGAAACTTGTCGAGTCTATGAT TAGTATTTCGGAACGAGGAGAGTCTTGTGATTTAAGGCAAGCAATAATGACCATGACAAATAATGTGATTTGCAGAATGTCTATGAGCACAAGATGCTTG GGTGACGGTGCTAATAATGAAGCTAGGGAGATTAAGGATTTGGTTCTTCAAGTTTCATTGCTCGGAGGCAAGTTAAGTGCAGGTAATGTCTTGGGTCCGT TGGCAAAACTTGACTTATTTGGATATGGAAGGCAGCTACGAATTGCACTCGATAAGTTTGATCGGTTGGTAGAAAGGATCATTAAGGAGCATGAAGAGAA GGAGATGGAAGGCACTGTAAGATCAGAAGGAATGGATTTAATGGATATTCTATTAGAAATTTCTAGAGATCCAAATGCAGAAATGAAGCTAACTAAAAAG GAAATCAAGGCTTTCTTCCTAGACATTATGATGGCTGGCACTGATACATCAGCAATCTCTGTGCAATGGGTCATTGCAGAGCTCATCAACCATCCAAAAG TATTCAAAAAACTGAGGGATGAAATTAATTCAGTTGTGGGGCCAAATAGGCTAGTCAGAGAATCAGACATTCCTAATCTGCCTTACTTACATACAGTTGT GAAAGAAACTCTAAGACTACACCCTCCATCACCTGTAGTTCTTAGAGCAAGCATCGAAGATTGCCAGATCAATGGCTTTGATGTAAAAGCTAATACCAGG ATGCTAGTCAATGTCTACACCATCCAGCGAGACCCAAATCTATGGAAAGATCCCGAGGAATTCATACCAGAGAGGTTTGCGGCTAACCATAACACGAATT CTTCACAAATGGAAATGAAAGGGCAAATTTTCAATTTCTTTCCATTTGGGAGTGGACGCCGAGGATGCCCCGGTGTAACACTCGCTTTAGCGGTGGTTCA ATCGTCTGTTGCAGTCTTGGTCCAATGCTTTGATTGGAAAGCCAAAGATGGAGAAAAGATTGATATGCAGGAGGGTTCGGGGTTCAGCATGGGAATGGCA AAACCACTTGTGTGCTATCCCATCACACATATGAATCCATTTGAGTTGGGGTTGGACATGGCAGAACCAGAATGA
AA sequence Show only first row Show all	>Potri.016G052600.1 pacid=42810489 polypeptide=Potri.016G052600.1.p locus=Potri.016G052600 ID=Potri.016G052600.1.v4.1 annot-version=v4.1 MAIIDGFLFFSFMVSIWFFCTFILKSLKNHTSSGTKIRHPPSPPALPIIGHLHLLGSVLGTSLHSLAQRYGPFIQLRMGVSTCYVVSDAEIAKEVLKTNE MNFVSRLQFDTTDCNIYEGSGFITAPYNAYWRFMKKLCMTRLLNTSQINQLVHLREDEMKKLVESMISISERGESCDLRQAIMTMTNNVICRMSMSTRCL GDGANNEAREIKDLVLQVSLLGGKLSAGNVLGPLAKLDLFGYGRQLRIALDKFDRLVERIIKEHEEKEMEGTVRSEGMDLMDILLEISRDPNAEMKLTKK EIKAFFLDIMMAGTDTSAISVQWVIAELINHPKVFKKLRDEINSVVGPNRLVRESDIPNLPYLHTVVKETLRLHPPSPVVLRASIEDCQINGFDVKANTR MLVNVYTIQRDPNLWKDPEEFIPERFAANHNTNSSQMEMKGQIFNFFPFGSGRRGCPGVTLALAVVQSSVAVLVQCFDWKAKDGEKIDMQEGSGFSMGMA KPLVCYPITHMNPFELGLDMAEPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.016G052600 [exp]	0	1
AT3G08680			Leucine-rich repeat protein ki...		Potri.003G138900 [exp]	2.23	0.9985
AT1G16250			Galactose oxidase/kelch repeat...		Potri.004G037400 [exp]	2.64	0.9969
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075100 [exp]	2.82	0.9993
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.015G091200 [exp]	3.46	0.9989
AT4G14746			unknown protein		Potri.003G057700 [exp]	4.24	0.9966
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075300 [exp]	4.89	0.9986
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.013G157100 [exp]	5.29	0.9940
AT1G79620			Leucine-rich repeat protein ki...		Potri.008G125600 [exp]	6.40	0.9813
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.004G183800 [exp]	7.14	0.9930	CYP87D11
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.003G118500 [exp]	8.12	0.9972

Compare expression of checked genes

Potri.016G052600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.