Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18140 563 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G22040 449 / 5e-160 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 99 / 8e-24 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 84 / 3e-18 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 79 / 4e-16 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G23430 78 / 1e-15 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G16750 78 / 1e-15 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT1G61210 77 / 2e-15 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 76 / 5e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 76 / 5e-15 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G148500 [exp] 85 / 1e-18 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 84 / 2e-18 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 84 / 3e-18 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 81 / 8e-17 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 81 / 2e-16 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 74 / 1e-14 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.011G045500 [exp] 74 / 2e-14 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G250200 [exp] 73 / 2e-14 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.019G096900 [exp] 72 / 6e-14 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042333 [exp] 633 / 0 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026332 [exp] 418 / 2e-148 AT2G22040 394 / 2e-139 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 96 / 2e-22 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 93 / 2e-21 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 89 / 8e-20 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 87 / 2e-19 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 80 / 2e-16 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10018081 [exp] 79 / 5e-16 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 79 / 5e-16 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10041007 [exp] 78 / 1e-15 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.016G052800.1 pacid=42809211 polypeptide=Potri.016G052800.1.p locus=Potri.016G052800 ID=Potri.016G052800.1.v4.1 annot-version=v4.1 ATGACACAGCCATCAGTAATACTTGCCACTGCTAGTTATGATCACACTATCAGATTTTGGGAGGCAAAAAGTGGCCGCTGTTACCGTACAATCCAATACC CCGATTCGCAAGTTAATAGGCTTGAGATAACCCCTGATAAGAGATACTTGGCCGCAGCCGGGAATCCACACATTAAGCTGTTTGATGTCAACTCAAATAG TCCTCATCCGGTAATGAGCTATGACTCGCATACGGCAAATGTTATGGCTGTGGGATTTCAGTGTGATGGAAACTGGATGTACTCAGGGTCTGAGGATGGA ACAGTGAAAATTTGGGATTTGAGGGCCCCTGGTTGTCAAAGGGAATATGAAAGTCGTGCGGCCGTCAACACTGTGGTGTTGCACCCAAACCAGACAGAGC TGATATCTGGAGACCAAAATGGGAACATTCGAGTATGGGATTTGACTGCAAATTCATGCAGTTGTGAATTGGTACCCGAGGTGGATACAGCTGTAAGGTC TCTAACAGTTATGTGGGATGGAAGCTTGGTAGTTGCTGCAAATAACCATGGAACATGTTATGTTTGGCGCTTGTTGCGAGGGAACCAGACAATGACCAAC TTTGAGCCACTTCATAAGCTACAAGCACATAATAAATACATTCTCAAATGTCTTCTCTCACCTGAATTTTGTGATCCACACAGATATCTGGCCACTGCAT CAGCCGATCACACTGTAAAGATATGGAATGTTGATGGTTTTACTTTAGAGAAAACTTTGATAGGTCACCAACGCTGGGTGTGGGACTGTGTTTTCTCTGT AGATGGTGCATACCTTATAACAGCTTCTTCTGATACGACAGCTAGACTTTGGTCCATGTCATCCGGTGAAGACATCAGGGTGTATCAAGGGCATCACAAG GCGACTGTTTGTTGTGCACTCCATGATGGAGCAGAACCCTCTTCAAGTTGA
AA sequence Show only first row Show all	>Potri.016G052800.1 pacid=42809211 polypeptide=Potri.016G052800.1.p locus=Potri.016G052800 ID=Potri.016G052800.1.v4.1 annot-version=v4.1 MTQPSVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKRYLAAAGNPHIKLFDVNSNSPHPVMSYDSHTANVMAVGFQCDGNWMYSGSEDG TVKIWDLRAPGCQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLLRGNQTMTN FEPLHKLQAHNKYILKCLLSPEFCDPHRYLATASADHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDTTARLWSMSSGEDIRVYQGHHK ATVCCALHDGAEPSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18140			Transducin/WD40 repeat-like su...		Potri.016G052800 [exp]	0	1
AT5G10620			methyltransferases (.1)		Potri.006G278500 [exp]	1.00	0.9313
AT1G14140			Mitochondrial substrate carrie...		Potri.010G165900 [exp]	2.44	0.8995
AT5G30495			Fcf2 pre-rRNA processing prote...		Potri.010G002100 [exp]	4.89	0.8924
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Potri.001G359400 [exp]	5.91	0.8656
AT4G11980		ATNUDX14, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.003G118300 [exp]	6.48	0.8633
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Potri.003G015700 [exp]	6.70	0.8414	Pt-TH1.1
AT3G13350	ARID		HMG (high mobility group) box ...		Potri.011G168800 [exp]	8.24	0.8398
AT5G13470			unknown protein		Potri.003G203900 [exp]	9.00	0.8557
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Potri.016G004200 [exp]	9.79	0.8483
AT4G13010			Oxidoreductase, zinc-binding d...		Potri.001G343000 [exp]	10.58	0.8566

Compare expression of checked genes

Potri.016G052800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.