Plant FIBer expression Database

Potri.016G052901 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G055100
[exp]
93 / 1e-23 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G052901.1 pacid=42809063 polypeptide=Potri.016G052901.1.p locus=Potri.016G052901 ID=Potri.016G052901.1.v4.1 annot-version=v4.1
ATGACAAGCCATCGAGCTAGAGGCAGGCCGTCTAAGAGTTCATACAAGAACACCAATCTCCATTCTCCGGTCAACAACCTCCGTTCTATGGTTAGTTATT
TTCCACGACATAGAGTAAGAAAATCAAGGGCTGAAACCATAACAGTTGCTGTGAAAACATGGCATCGTTTGGGTTCGGAAGATTCGGAAACCCTACTAGG
AGGGCTTATGGAAAAGAAGAGTAGCCGACCGCAATGGATCAGGAGAAAGAAGAGCTCGGTAGATAAGGAAACCCAACTGCGGTGGCTTATGGAAAAGATA
AGTAGCCTAAGGATTGGGGAAAAGAAGTGCATAGATCTTATGGAAAAGAAGAGTAGCCTGCCACAATGGATTAGGAGAAAGAGGAGCATGGTTCCAAAAT
TTAATGAGCAATTGAAGAATACAAGTAGAACATCAAACGATGAATCTAGTCTGTCCATTGCCAGAATCTTCGTCGGTTCCATGGATGGCAAAAAGTGTGA
TTCCGGGACCAATTCCGGATCTCGATTCTTTTCCCGACCACGAGTGGAGGTTCTCTTCGGCATAGCGCGGGCTCAGGAGCAGAAATTAGATTGTTTGGAG
CAAACCATAATAAATCTAGCTTTTCTAATGGGTAACACAATGGAAAAGAAGAAACTAAAAGCTAAGGGAAAGAAAGGTAGATCAAAATGA
AA sequence
>Potri.016G052901.1 pacid=42809063 polypeptide=Potri.016G052901.1.p locus=Potri.016G052901 ID=Potri.016G052901.1.v4.1 annot-version=v4.1
MTSHRARGRPSKSSYKNTNLHSPVNNLRSMVSYFPRHRVRKSRAETITVAVKTWHRLGSEDSETLLGGLMEKKSSRPQWIRRKKSSVDKETQLRWLMEKI
SSLRIGEKKCIDLMEKKSSLPQWIRRKRSMVPKFNEQLKNTSRTSNDESSLSIARIFVGSMDGKKCDSGTNSGSRFFSRPRVEVLFGIARAQEQKLDCLE
QTIINLAFLMGNTMEKKKLKAKGKKGRSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G052901
[exp]
0 1
AT4G19210 ABCE2, ATRLI2 ARABIDOPSIS THALIANA RNASE L I... Potri.004G235900
[exp]
5.47 0.7860 Pt-ATRLI1.1
AT1G79510 Uncharacterized conserved prot... Potri.008G083400
[exp]
6.48 0.7903
AT3G04800 ATTIM23-3 translocase inner membrane sub... Potri.005G051800
[exp]
7.74 0.7888
AT1G10270 GRP23 glutamine-rich protein 23 (.1) Potri.003G002950
[exp]
8.48 0.7942
AT1G78160 APUM7 pumilio 7 (.1) Potri.002G095400
[exp]
16.00 0.7635
Potri.002G154150
[exp]
22.44 0.7865
AT5G47430 DWNN domain, a CCHC-type zinc ... Potri.013G112200
[exp]
22.84 0.7750
AT4G13870 WRNEXO, ATWRNEX... Werner syndrome-like exonuclea... Potri.017G059200
[exp]
24.49 0.7125
AT5G56290 EMB2790, PEX5, ... EMBRYO DEFECTIVE 2790, ARABIDO... Potri.001G473100
[exp]
26.85 0.7750 PEX5.2
AT4G17950 AT-hook AT hook motif DNA-binding fami... Potri.003G090900
[exp]
28.86 0.7492

Potri.016G052901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.