Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57650 606 / 0 LPAT2 lysophosphatidyl acyltransferase 2 (.1) AT1G51260 481 / 8e-170 LPAT3 lysophosphatidyl acyltransferase 3 (.1) AT3G18850 163 / 4e-46 LPAT5 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) AT1G75020 158 / 4e-44 LPAT4 lysophosphatidyl acyltransferase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G055000 [exp] 711 / 0 AT3G57650 587 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Potri.001G259200 [exp] 499 / 9e-177 AT1G51260 521 / 0.0 lysophosphatidyl acyltransferase 3 (.1) Potri.009G054500 [exp] 384 / 2e-131 AT3G57650 374 / 2e-128 lysophosphatidyl acyltransferase 2 (.1) Potri.T125204 [exp] 176 / 6e-51 AT3G18850 493 / 9e-176 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) Potri.009G112307 [exp] 176 / 7e-51 AT3G18850 493 / 1e-175 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) Potri.002G133100 [exp] 173 / 6e-50 AT1G75020 536 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2) Potri.014G040600 [exp] 162 / 9e-46 AT1G75020 485 / 3e-172 lysophosphatidyl acyltransferase 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026312 [exp] 632 / 0 AT3G57650 615 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10040492 [exp] 622 / 0 AT3G57650 610 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10011298 [exp] 621 / 0 AT3G57650 609 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10042356 [exp] 620 / 0 AT3G57650 611 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10002556 [exp] 443 / 5e-154 AT1G51260 496 / 8e-176 lysophosphatidyl acyltransferase 3 (.1) Lus10027375 [exp] 439 / 1e-152 AT1G51260 495 / 1e-175 lysophosphatidyl acyltransferase 3 (.1) Lus10032727 [exp] 173 / 1e-49 AT1G75020 530 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2) Lus10018803 [exp] 172 / 3e-49 AT1G75020 531 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase CL0228 [poplar] [flax] PF16076 [poplar] [flax] Acyltransf_C Acyltransferase C-terminus
Representative CDS sequence Show only first row Show all	>Potri.016G053000.2 pacid=42809734 polypeptide=Potri.016G053000.2.p locus=Potri.016G053000 ID=Potri.016G053000.2.v4.1 annot-version=v4.1 ATGATCCTGACACTCTCATATCATCTAATCCCCATTTCACACACCCAAAAAAATCAAAAAATCCTACAACCTCCTCTCTTCTCTTTCTGCACTCTCAAAT CTCTCTATTTTCTTTTTTTAAAAATAAAATTAGTGGAGGTGTTTGGCATGGCGATTGTATCACTTGTTATTTTGCCGTTAGGCGTTTTCTTTTTTTGCTC AGGTTTAATTGTTAATCTCATTCAGGCAATTTGCTTTGTTTTTATTCGGCCTTTATCAAAGAGCACGTACAGAAAAATCAATAGGCAATTAGCGGAATTG TTATGGCTCGAACTCGTTTGGATCTTCGATTGGTGGGCTGGAGTCCAGATCAAAGTGTTTACAGATCCAGAAACTTTCCGTTTGATGGGTAAGGAACATG CACTTCTTATATGCAACCACAAAAGCGACATTGATTGGCTTGTCGGATGGGTTTTGGCTCAGCGTTCTGGGTGCCTGGGAAGTGCGTTAGCTGTCATGAA AAAATCATCAAAATTTCTTCCGGTGATAGGTTGGTCAATGTGGTTTTCTGAATACCTTTTTCTTGAAAGAAACTGGGCCAAGGATGAAAACACATTAAAG TCTGGTCTGCAACGGCTAAAGGACTTTCCTCGTCCATTTTGGCTGGCTCTTTTTGTGGAAGGAACTCGCTTTACTCAGGCAAAGCTTTTAGCAGCTCAGG AATATGCAGCTTCTCAAGGACTGCCTATCCCCAGAAATGTTTTAATTCCTCGTACGAAGGGATTTGTTTCAGCGGTGAGTAATATGCGTTCATTTGTACC AGCCATATATGATATAACATTGGCTATCCCAAAAAGTTCTCCTCCACCTACGATACTCAACCTCTTTAAGGGGAAATCTTCTGTGGTGCACGTACACATA AAGCGGCATTTGATGAAGGAATTGCCTGAAACAGATGATAGTGTTGCACAGTGGTGTAAAGATATTTTTGTGGCCAAGGATGCATTACTGGACAAGCATA TGGCTGACGACACCTTCAGTGCCCAAGAATTGCAAGATCATGGTCGATCAAAGAAGTCTCTTGTGGTTGTTACCTCTTGGGCATGCCTCCTTATTTTTGG GGCGCTGAAATTCCTTCAATGGTCTTCCCTTTTGTCCTCACGGAGGGGTATAGCATTTACAGTGTCGGGTTTGGCCGTCGTCACTGTCCTAATGCACATC TTGATTCGGTTTTCTCAGTCAGAGCGTTCAACACCCGCCAAGGTTGCTCCAGCGAAGACCAAGAATGAAGGAAAACCTTCAGAGACAGGAGATGACAAAC AACACTGA
AA sequence Show only first row Show all	>Potri.016G053000.2 pacid=42809734 polypeptide=Potri.016G053000.2.p locus=Potri.016G053000 ID=Potri.016G053000.2.v4.1 annot-version=v4.1 MILTLSYHLIPISHTQKNQKILQPPLFSFCTLKSLYFLFLKIKLVEVFGMAIVSLVILPLGVFFFCSGLIVNLIQAICFVFIRPLSKSTYRKINRQLAEL LWLELVWIFDWWAGVQIKVFTDPETFRLMGKEHALLICNHKSDIDWLVGWVLAQRSGCLGSALAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDENTLK SGLQRLKDFPRPFWLALFVEGTRFTQAKLLAAQEYAASQGLPIPRNVLIPRTKGFVSAVSNMRSFVPAIYDITLAIPKSSPPPTILNLFKGKSSVVHVHI KRHLMKELPETDDSVAQWCKDIFVAKDALLDKHMADDTFSAQELQDHGRSKKSLVVVTSWACLLIFGALKFLQWSSLLSSRRGIAFTVSGLAVVTVLMHI LIRFSQSERSTPAKVAPAKTKNEGKPSETGDDKQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.016G053000 [exp]	0	1
AT5G04190		PKS4	phytochrome kinase substrate 4...		Potri.005G090000 [exp]	9.48	0.7557
AT5G66450			Phosphatidic acid phosphatase ...		Potri.005G120400 [exp]	10.53	0.7972
AT3G07720			Galactose oxidase/kelch repeat...		Potri.014G168300 [exp]	11.66	0.7717
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Potri.010G204400 [exp]	15.16	0.8468
					Potri.006G222400 [exp]	15.74	0.7070
AT1G43245			SET domain-containing protein ...		Potri.005G193701 [exp]	19.36	0.7402
AT1G10310			NAD(P)-binding Rossmann-fold s...		Potri.004G228533 [exp]	19.44	0.7885
					Potri.011G046112 [exp]	21.35	0.7970
AT1G47750		PEX11A	peroxin 11A (.1)		Potri.002G134000 [exp]	21.49	0.7683
AT1G48950			C3HC zinc finger-like (.1)		Potri.012G058550 [exp]	34.87	0.7637

Compare expression of checked genes

Potri.016G053000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.