Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68030 114 / 1e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14770 107 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G03780 72 / 5e-13 TRFL10 TRF-like 10 (.1) AT1G01150 69 / 2e-12 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) AT4G12670 67 / 2e-11 Homeodomain-like superfamily protein (.1) AT5G58340 54 / 3e-07 MYB myb-like HTH transcriptional regulator family protein (.1.2) AT1G17520 47 / 4e-05 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT1G72740 47 / 4e-05 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G17460 47 / 5e-05 MYB TRFL3 TRF-like 3 (.1.2) AT1G15720 45 / 0.0002 MYB TRFL5 TRF-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G054401 [exp] 557 / 0 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G005600 [exp] 77 / 2e-14 AT5G03780 94 / 1e-20 TRF-like 10 (.1) Potri.013G154500 [exp] 53 / 6e-07 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G147400 [exp] 47 / 2e-05 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.003G063700 [exp] 44 / 0.0006 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.009G087000 [exp] 43 / 0.0006 AT1G49950 277 / 5e-93 telomere repeat binding factor 1 (.1.2.3) Potri.001G170200 [exp] 43 / 0.001 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012209 [exp] 167 / 6e-43 AT1G68030 97 / 5e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10026308 [exp] 154 / 6e-41 AT1G01150 63 / 6e-11 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10011320 [exp] 151 / 1e-37 AT1G68030 84 / 2e-17 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10042361 [exp] 89 / 1e-20 AT1G01150 63 / 2e-12 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10015562 [exp] 84 / 1e-16 AT1G14770 66 / 3e-11 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10024200 [exp] 64 / 2e-10 AT1G15720 65 / 5e-11 TRF-like 5 (.1) Lus10020771 [exp] 58 / 2e-08 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2) Lus10017320 [exp] 54 / 4e-07 AT5G58340 76 / 8e-14 myb-like HTH transcriptional regulator family protein (.1.2) Lus10017319 [exp] 53 / 5e-07 AT5G58340 66 / 2e-11 myb-like HTH transcriptional regulator family protein (.1.2) Lus10042209 [exp] 52 / 2e-06 AT1G15720 70 / 1e-12 TRF-like 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G053300.6 pacid=42810428 polypeptide=Potri.016G053300.6.p locus=Potri.016G053300 ID=Potri.016G053300.6.v4.1 annot-version=v4.1 ATGGATGACCCATCTAGTTCAGCTACGACCCTCGCGTGGCTTTGGGTGATTGAGTACCTGGCAAGTTTTCGGCAAATAGAGCCCTCGATTTTACATGAAT TGATTGAGGCAGCTCCGGAAATACCTGATGATTTGGGGAAAAACACGAGGGAAATGGTTGCTTTGAGATGCTTAGAGGATTTGTTTTGTCGTAGTGATAA TGGAATTGCGAATGATGTTACTTCTAAAGAACTGAAAGTCACGTTTGATTTGTCGGAGAGTTGTGAGGATGTGCTCCAGTCCATACTGCAAGAGACATCA GTATCGGATTTGAATAGGGGTGGACCGGAGCTATTGAAATGGGATATTCACCCTTTCATTATGCATAAAAGAGCTTGCATGCCTAAATGTGCTTTGGAGA AGGTGAAAGATGCAATTCTTGAGGGTATTCATCCATATGCTTCATTGAAGGAATATAGTGAACTGGTGAATGCAAATGATAGGGGTAATAGAATCACTAC AGATTATGGGGACGATGGTGCACCTGTGGGGAGGATAGGTGGGAGTGATACTGATGGACAAATTAACCCTCCTGAAGAAAGTTCCATTCCTTTGCTGCAT GAAAATGAGAATGTAGTGGAAGACAATTCATATAACAGGAACTTGTTACACTTTGAGAGAGAGAGAAGTGGTTCGGCTAGTCAAAATCTGGCTGGAGACC ATGAAGATCAAGGTTGTGTTGATGGTGACCATCTTCAGCCACAAGCCAAGAGGTTCAAGGAAGATGCCTTGCATGACAATCTGTCCATGGGACAAATTTC TTCGACTCCTCCACAGCACAAGGACATGGTAGAAGATTCATTTGAGATGGTGGTTGAGGATTCTGAAAACAGAGATTTTCACTTGGAAAAAGAATCTTCA CAGGGAGGACTGGAAGGAAGCATACCTGTAGAGAACGATCATGATGAAGATGTTGGTATAGATAGGCATGGGCATAGTCTTGATGCTGACAATGCATTCC AGCACAATCAGCATGAAATTGCTCATAATGCCAACAAAATGCCACTATCTGGGGATGGACTCCATCAGTATAGCTTTGTGGATGAAATCAACCGTGCTGA ACCTAGAAAATCAAATGCTGCACCATCTGTGGGAACCTCGGACAGATTATTTGTTAATGGAAACAAAGGCAAATCTGATCATAGTGGTCAACAAAAACCA TCAAATAGTGTATCCTCAAATGGATTTCACAGGAATACTGATGCTGATGAAAGAGAAGCTGGCACAGACCATCTATCTGAAGAAGATGAGTCAAATGAGA GTGACGAGTATGAGCAGGAGAGGGTTGATGTTGGTTTGAGGAAGAGTCATTTTCTGAGTTCTCAATACATGTTAAGTCATGATTCTCTGGCAGAAGCTAA CTGGACAGATCAAAATCTTTGCATAAAATGCTGTAAAGATGGTCAGTTGTTGGTTTGTGGTGCTGGTAGTTGCTCATTGGTGATTCATGAGAACTGTTTA GTTTTCTCACCACATTTTGATGAGAGGGGAGACTTTTACTGTCCTTTCTGTGCATATTCTCTTGCTATTTCAGAGTACCTTGAAGCTAAGAAAAAAGCCT ATTCAGCGAGGAAGGAACTGAAGTTATTTATTGAAACGAGACAGGAGTATCGGTCAAACAAACATACTCAAAGACTACTTAGCAAAAGACATGGCAGCTC AAGACAGAATGAAGATAAGGATCTGCTTAATAAATTTCTTGATTATGAGAATTTGGTTGGAGAAAAACGCAAACAATCAAATAATCGAGGTCAGATATCT GAAGGTAATGACCATCAATTTCAGAAAGGAAAAGGGAAGAAGAAGCAAGTAGAGCCTTTGGCATCATGCATTGGTGTTAATTCGCTGTGTAGAGAAGAAG AGCCTGATGTAAATGTTAGGACTAATCATATATCTACGGTAGAAAAGGAAGGGGAGGAGGTGGTTCAAGAGAACTCATCTGGAACCGAACTTGACATAAA TCAACACCAAGTTAGTGTTGATCCTAAATACAGTGTTGATAATCATTTGTGTAAAGAAAAAGAGATTGTCTCTGGAAGCCAGAGAACAGATGGTCGAAGA CAGAAAGCTGTTTGTGCCATCAGCAGCGATGGAGGAGAAACCTCTGGTGACGAAGATGACAAGTCAATAAGTACTAATTACTTCATAAGATTCCGAAAGA GAGAGAGACAATATACCCCTGCAATGCCTCAGTCGAGGCGAAAAAAGGTTCCGTGGACAGCCCATGAGGAGGAGATACTCAAGGAGGGAGTGCAGAAATT TGCAAGTGACGGGAAATATCCCTGGAAGGACATTTTGGAGTATGGTAGTTCTGTATTTTCGAATGGCCGAACAACAATAGACCTCAAGGATAAATGGCGG AACATGTGCAAATTAAGCCCTAAATCCAAGTAG
AA sequence Show only first row Show all	>Potri.016G053300.6 pacid=42810428 polypeptide=Potri.016G053300.6.p locus=Potri.016G053300 ID=Potri.016G053300.6.v4.1 annot-version=v4.1 MDDPSSSATTLAWLWVIEYLASFRQIEPSILHELIEAAPEIPDDLGKNTREMVALRCLEDLFCRSDNGIANDVTSKELKVTFDLSESCEDVLQSILQETS VSDLNRGGPELLKWDIHPFIMHKRACMPKCALEKVKDAILEGIHPYASLKEYSELVNANDRGNRITTDYGDDGAPVGRIGGSDTDGQINPPEESSIPLLH ENENVVEDNSYNRNLLHFERERSGSASQNLAGDHEDQGCVDGDHLQPQAKRFKEDALHDNLSMGQISSTPPQHKDMVEDSFEMVVEDSENRDFHLEKESS QGGLEGSIPVENDHDEDVGIDRHGHSLDADNAFQHNQHEIAHNANKMPLSGDGLHQYSFVDEINRAEPRKSNAAPSVGTSDRLFVNGNKGKSDHSGQQKP SNSVSSNGFHRNTDADEREAGTDHLSEEDESNESDEYEQERVDVGLRKSHFLSSQYMLSHDSLAEANWTDQNLCIKCCKDGQLLVCGAGSCSLVIHENCL VFSPHFDERGDFYCPFCAYSLAISEYLEAKKKAYSARKELKLFIETRQEYRSNKHTQRLLSKRHGSSRQNEDKDLLNKFLDYENLVGEKRKQSNNRGQIS EGNDHQFQKGKGKKKQVEPLASCIGVNSLCREEEPDVNVRTNHISTVEKEGEEVVQENSSGTELDINQHQVSVDPKYSVDNHLCKEKEIVSGSQRTDGRR QKAVCAISSDGGETSGDEDDKSISTNYFIRFRKRERQYTPAMPQSRRKKVPWTAHEEEILKEGVQKFASDGKYPWKDILEYGSSVFSNGRTTIDLKDKWR NMCKLSPKSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68030			RING/FYVE/PHD zinc finger supe...		Potri.016G053300 [exp]	0	1
AT1G73970			unknown protein		Potri.008G016000 [exp]	1.41	0.8848
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.002G188700 [exp]	5.47	0.8559
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Potri.002G230800 [exp]	5.91	0.8397
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.001G276800 [exp]	8.71	0.7862
AT5G47690			binding (.1.2.3)		Potri.006G004750 [exp]	9.21	0.8494
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.010G178600 [exp]	9.59	0.8539
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187500 [exp]	10.00	0.7976
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	11.13	0.8594
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.019G087900 [exp]	15.23	0.8357	SDG907,SUVH3.1
AT1G58030		CAT2	cationic amino acid transporte...		Potri.019G039700 [exp]	16.43	0.7533	Pt-CAT3.3,PtrCAT3

Compare expression of checked genes

Potri.016G053300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.