Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52630 785 / 0 MEF1 mitochondrial RNAediting factor 1 (.1) AT4G02750 440 / 2e-145 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G04780 432 / 4e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 426 / 5e-141 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14850 423 / 7e-140 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 427 / 5e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 418 / 7e-137 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G03880 414 / 7e-137 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G25360 416 / 1e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 410 / 2e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G001200 [exp] 456 / 4e-154 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G208000 [exp] 437 / 1e-145 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086900 [exp] 432 / 1e-143 AT4G14850 964 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 430 / 7e-142 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G168800 [exp] 424 / 2e-141 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 424 / 5e-140 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 429 / 3e-139 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 418 / 5e-139 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 423 / 1e-138 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011323 [exp] 860 / 0 AT5G52630 790 / 0.0 mitochondrial RNAediting factor 1 (.1) Lus10012206 [exp] 849 / 0 AT5G52630 786 / 0.0 mitochondrial RNAediting factor 1 (.1) Lus10039117 [exp] 448 / 8e-150 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006123 [exp] 448 / 1e-149 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 447 / 3e-149 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 422 / 5e-138 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10031994 [exp] 421 / 2e-137 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 424 / 4e-137 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 419 / 1e-136 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034715 [exp] 411 / 8e-136 AT5G04780 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.016G053500.2 pacid=42810562 polypeptide=Potri.016G053500.2.p locus=Potri.016G053500 ID=Potri.016G053500.2.v4.1 annot-version=v4.1 ATGCTTCAGCATGCCCCTAAAAGACCACTGTATGTGCCCTTACAAAATATCTTAACAAAATCCCAGCACCAAAATCCAATAATAAAAACCCAATCTTTGT CTCAAGAAGGCACCATAACCCCACAAAATCCACCAAACCGATTTTGTTCTGAAAAGAAGTATGGGCACATATGTGACCTCCTTTTGTCACAAACTCGCTC AAGGTCTCTGTTAAAGGGCCAACAAATTCATGCCCATATAATAAAATCTGGCCTACAAGTAATCCCTCTCGTTTGCCATTACCTTATCAACTTTTATTCG AAGACACAGCTGCCCCTTCTTTCCAGCCAAGTTTTCGAAGAGAGTGAAAGAAAATCATCGACTACTTGGAGCTCTGTTATATCCTCATTTGCACAGAATG AGGAACCGGTGCTTGCCATTCAGTACTTTTGTCGGATGATTGGCGAAAATCTATGCCCTGATGATCATATCTTTCCCAGTGCTACTAAAGCGTGTGCGAT TTTGGGGAGATGTGATGTTGGGAAATCTGTGCATTGTCTGGTTATTAAAACTGGGTATGATGTTGATGTGTTTGTTGGGAGTTCTTTGGTTGATATGTAT GCCAAGTGTGGGGATATTAAGGAAGCGAGGAATGTGTTTGATGAAATGCCGCATAGGAATGTGGTTTCTTGGAGTGGGATGATTTATGGGTATACTCAAT TGGGTGAACATGAGGAGGCTATGAGGTTGTTTAAAGAGGCTTTATTAGAAGGTTTAGATGTGAATGATTTTACGCTTTCAAGTGTAATTAGGGTGTGTGG TAGTGCTACATTGCTTGAACTTGGGAAGCAAATACATGGGTTGTGTTTCAAAACGAGTTATGATTTGTCGGGTTTCGTAGGTAGTTCTTTGATTTCCTTG TATTCGAAGTGTGGTCTTATTGAAGGAGCTTATAGGGTTTTTGATGAGGTGCCTATTAAGAATCTTGGAATGTGGAATGCTATGCTGATCGCTTGTGCTC AACATGCACATACGAAGGAAGCATTTGATTTGTTTACGAAGATGGAAAATGCTGGGATGAGACCAAATTTTATTACCTTTTTATGTGTGCTTTACGCTTG TAGCCATGCAGGGTTAGTTGAAGAAGGAAAGAAATATTTTGCACTCATGAAGAAGTATGAGATTGAGCCAGGGACCCAACATTATGCTTCTATGGTGGAC TTACTTGGCCGTGCTGGAAAATTGCAGGAAGCACTTTCGGTTATCAAGGGAATGCCTACAGAACCAACAGAATCTGTGTGGGGAGCTTTCATAACAGGGT GTCGCATTCATGGGAACACTGACTTGGCAGCCTTTGCAGCTGATAAAGTCTTTGAGTTGGGTGCTGTAAGTTCAGGTTTGCATGTGATGTTATCGAATGC TTATGCAGCTGCTGGAAGGTATGAGGATGCAGCCAAAGCTAGAAAGATGCTTAGGGACCGAGGGGTGAAGAAGGAAACTGGATTGAGTTGGATCGAGGAG GGAAATAGAGTTCACAAATTTGCAGCAGGGGATAGGTTTCATGTCAGAATGAAAGAAATTTACCAGAAATTGGAGGACTTGGGAGAGGAAATGGAGAGAG CTGGTTATGTTGCAGACACAAGTTTTGTGCTGCGAGAGGTGGGTAGTGAAGAGAAAAACCAGACCATTAGGTACCATAGTGAAAGACTGGCCATTGCATT TGGGCTCATTTCCATCCCACTTGGCAGGCCAATCAGGATTATGAAGAACTTGCGAGTTTGCGGTGATTGTCATAATGCAATCAAGTTTATTTCCAAACTC TCTGGGAGAGTAATCATTGTGAGAGATAACAACCGGTTCCATCGTTTTGAAGATGGAAAATGCTCTTGTGCTGACTATTGGTGA
AA sequence Show only first row Show all	>Potri.016G053500.2 pacid=42810562 polypeptide=Potri.016G053500.2.p locus=Potri.016G053500 ID=Potri.016G053500.2.v4.1 annot-version=v4.1 MLQHAPKRPLYVPLQNILTKSQHQNPIIKTQSLSQEGTITPQNPPNRFCSEKKYGHICDLLLSQTRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYS KTQLPLLSSQVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMY AKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISL YSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYASMVD LLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGLSWIEE GNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIKFISKL SGRVIIVRDNNRFHRFEDGKCSCADYW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	0	1
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	2.00	0.9281
AT5G61800			Pentatricopeptide repeat (PPR)...		Potri.012G110800 [exp]	2.44	0.9080
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.014G052800 [exp]	2.82	0.8988
AT3G23330			Tetratricopeptide repeat (TPR)...		Potri.001G186500 [exp]	3.87	0.8936
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Potri.017G084900 [exp]	4.24	0.8989
AT3G56690		CIP111	Cam interacting protein 111 (....		Potri.006G035000 [exp]	5.09	0.8727	Pt-CIP111.1
AT1G69290			Pentatricopeptide repeat (PPR)...		Potri.008G095800 [exp]	5.29	0.8720
AT3G26540			Tetratricopeptide repeat (TPR)...		Potri.002G075300 [exp]	5.65	0.8904
AT4G20020			unknown protein		Potri.004G218650 [exp]	8.00	0.8703
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G027400 [exp]	8.94	0.8335

Compare expression of checked genes

Potri.016G053500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.