Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51340 543 / 0 MATE efflux family protein (.1.2) AT3G08040 474 / 1e-163 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT2G38330 320 / 2e-103 MATE efflux family protein (.1) AT4G38380 312 / 4e-100 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G053700 [exp] 576 / 0 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.009G061100 [exp] 535 / 0 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.001G266900 [exp] 521 / 0 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.016G126000 [exp] 322 / 7e-104 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.009G143400 [exp] 318 / 4e-102 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 318 / 4e-102 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 295 / 3e-93 AT4G38380 547 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042365 [exp] 569 / 0 AT1G51340 571 / 0.0 MATE efflux family protein (.1.2) Lus10026303 [exp] 566 / 0 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10039609 [exp] 517 / 3e-180 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10029517 [exp] 495 / 2e-170 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10027367 [exp] 495 / 8e-170 AT1G51340 664 / 0.0 MATE efflux family protein (.1.2) Lus10016412 [exp] 490 / 1e-169 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2) Lus10012227 [exp] 303 / 3e-96 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 295 / 3e-93 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 266 / 2e-82 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10014441 [exp] 248 / 1e-72 AT4G38380 501 / 2e-167 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.016G053600.1 pacid=42810436 polypeptide=Potri.016G053600.1.p locus=Potri.016G053600 ID=Potri.016G053600.1.v4.1 annot-version=v4.1 ATGTTCGCCGCTGATGCTGTTCTTTATCTATGGAGAAACATGGCCAAGATGCCTCTCTTTGTGTTCTTCAAGGACGCAAGGAGTGTTTTCAGGAAGGATG AGTTGGGGCTGGAAATAGCACAAATTGCAATTCCTGCAGCACTTGCTTTAGCAGCAGACCCTATTGCTTCTTTAATTGACACAGCATTCATTGGCCATAT AGGCCCTGTGGAGCTTGCTGCTGTTGGGGTTTCTATTGCTGTTTTCAATCAAGTGTCCAAGATTGCCATATTCCCACTTGTTAGTATCACAACTTCTTTT GTTGCTGAGGAAGATGCTACTGGAGGATTGACTACTGAAGACCATGAAGATGCAAAACTTCAAGGTGGTTTTGCTGTCAATAAAGAAATGGAAGAGCTGT TACCTCAAGCTGAGTCCACATACAAATCATCATCCGTGAGCAGTAATTACACCAAAAGGGAATATGAGAGAAGGCATATTCCATCTGCTTCTTCTGCTTT GCTCGTTGGTTGTGTTCTTGGCATAATCCAAACTTTATTCCTCACCTTTTCTGCTAAACCAATCTTGAGCTACATGGGTGTAAATTATGATTCTCCGATG CTAATACCAGCGGAACGATACTTGATATTGAGGTCACTCGGTGCTCCTGCTGTTCTCCTTTCCTTGGCAATGCAAGGGGTTTTTCGAGGAATTAAGGATA CAAAAACTCCTTTATATGCTACTGTTATTGGAGATGCGGCAAACATTGTATTAGATCCCATATTTATATTTGTATTCCGAATGGATGTCAGTGGTGCAGC CATTGCACATGTCATTTCTCAGTACTTAATCTCTATAATACTGTTATGGAAATTAATTAAACATGTTGATCTACTATCACCAAGCATGGAAGACCTCCAA ATTGGCCGGTTTCTCAAAAATGGGTGTCTTCTCCTCGTAAGAGTAATAGCTGCAACAGCCTGTGTCACTCTGGCAGCATCATTGGCTACAAGGCACGGAT CTACATCAATGGCTGCATTTCAGGTTTCCTTGCAGATTTGGTTGGCGACCTCTTTGCTTGCTGATGGTCTGGCTGTGGCTGGACAGGCAATCCTAGCAAG TGCATTTGCAAAGAAGGATTATGACAAAGCCACAGCCACAGCTTCTCGTGTATTACAGTATGCTTTGGTCCTAGGTGTAGTGCTCTCAATCATCCTTTCA GTTGGATTACAGTTTGCTTCGAGATTGTTTACAAAAGACGCCAGTGTTTTGCACCTTATTAGTGTGGGCATCCCGTTTGTTGCAGCAACTCAACCAATCA ATGTTTTGGCCTTTGTTTTTGATGGAGTCAACTATGGAGTGTCAGATTTTGCATATTCCGCTTACTCAATGGTTTTGGTGGCAATTATAAGCATTCTTTG CTTATTTACCCTATCCTCAAGTCATGGTTATGTTGGCATCTGGGTTGCGTTGGCCACTTTCATGAGTTTGCGTGCATTAGCTGGTTTTTTAAGGATAGGA ACTGGTATGGGGCCTTGGAGGTTTCTTAAGAGCTGA
AA sequence Show only first row Show all	>Potri.016G053600.1 pacid=42810436 polypeptide=Potri.016G053600.1.p locus=Potri.016G053600 ID=Potri.016G053600.1.v4.1 annot-version=v4.1 MFAADAVLYLWRNMAKMPLFVFFKDARSVFRKDELGLEIAQIAIPAALALAADPIASLIDTAFIGHIGPVELAAVGVSIAVFNQVSKIAIFPLVSITTSF VAEEDATGGLTTEDHEDAKLQGGFAVNKEMEELLPQAESTYKSSSVSSNYTKREYERRHIPSASSALLVGCVLGIIQTLFLTFSAKPILSYMGVNYDSPM LIPAERYLILRSLGAPAVLLSLAMQGVFRGIKDTKTPLYATVIGDAANIVLDPIFIFVFRMDVSGAAIAHVISQYLISIILLWKLIKHVDLLSPSMEDLQ IGRFLKNGCLLLVRVIAATACVTLAASLATRHGSTSMAAFQVSLQIWLATSLLADGLAVAGQAILASAFAKKDYDKATATASRVLQYALVLGVVLSIILS VGLQFASRLFTKDASVLHLISVGIPFVAATQPINVLAFVFDGVNYGVSDFAYSAYSMVLVAIISILCLFTLSSSHGYVGIWVALATFMSLRALAGFLRIG TGMGPWRFLKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51340			MATE efflux family protein (.1...		Potri.016G053600 [exp]	0	1
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.006G262100 [exp]	2.23	0.8364
AT2G16060		ATGLB1, ARATHGL...	CLASS I HEMOGLOBIN, hemoglobin...		Potri.009G110901 [exp]	3.46	0.8504
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.001G437500 [exp]	4.69	0.8010
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.010G250500 [exp]	11.48	0.8412
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	15.29	0.8163
AT4G27190			NB-ARC domain-containing disea...		Potri.013G015900 [exp]	18.73	0.8089
AT5G25260			SPFH/Band 7/PHB domain-contain...		Potri.006G258900 [exp]	19.33	0.8138
AT3G24240			Leucine-rich repeat receptor-l...		Potri.003G175700 [exp]	20.19	0.8383
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.017G016600 [exp]	28.28	0.8051
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.009G106200 [exp]	28.74	0.7719	SQN.1

Compare expression of checked genes

Potri.016G053600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.