Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41900 820 / 0 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G12850 624 / 0 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G58620 427 / 4e-141 C3HZnF zinc finger (CCCH-type) family protein (.1) AT2G40140 361 / 1e-115 C3HZnF ATSZF2, CZF1, ZFAR1 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) AT3G55980 345 / 8e-110 C3HZnF ATSZF1 salt-inducible zinc finger 1 (.1) AT2G25900 196 / 9e-57 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G19810 195 / 8e-56 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT4G29190 193 / 3e-55 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G07500 181 / 3e-52 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G03790 181 / 2e-50 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G053800 [exp] 1122 / 0 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053900 [exp] 1069 / 0 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G266700 [exp] 818 / 0 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G061000 [exp] 769 / 0 AT2G41900 672 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G258400 [exp] 505 / 3e-170 AT5G12850 506 / 4e-171 CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G053500 [exp] 481 / 6e-162 AT5G12850 476 / 5e-160 CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G046800 [exp] 419 / 1e-136 AT5G58620 553 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.008G069400 [exp] 417 / 2e-136 AT2G40140 557 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.010G187900 [exp] 417 / 5e-136 AT2G40140 570 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019709 [exp] 693 / 0 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10028970 [exp] 414 / 2e-135 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10007493 [exp] 405 / 4e-132 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10040662 [exp] 235 / 3e-70 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1) Lus10035006 [exp] 199 / 7e-57 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10012922 [exp] 197 / 2e-56 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10017708 [exp] 180 / 6e-51 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033665 [exp] 177 / 5e-50 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018621 [exp] 172 / 1e-47 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.016G053700.3 pacid=42808968 polypeptide=Potri.016G053700.3.p locus=Potri.016G053700 ID=Potri.016G053700.3.v4.1 annot-version=v4.1 ATGTGCTGCCGATTAGAGAGATTGAAGCTTGCAGCGACTCCTACACCACCTACAATTTATTTTGACAAAAGCAGACCCTCAAACATAGACATGAATCACT TAACTATCAAGACTGAAGATGCTTTTGCTAGCTTGCTTGAGCTTGCTGCTAACAATGATGTTGAGGGCTTTAAGAAATCTATTGAATGTGACCCTTCTTG TGCTGATGAAATTGGACTATGGTATGGCCGGCAAAAGGGCTCTAAGCAGATGGTTAATGATCTTAGGACCCCACTGATGGTTGCTGCTACATATGGTAGC ATTGATGTTATAAAGGTGATTCTTTCTCTATCTGATGTTGATGTCAGTCGCTCTTGTGGTGCTGACAAGAGCACTGCCCTTCACTGTGCTGCATCAGGTG GGGCTGTGAATGCTGTTGATGTTGTGAAATTGCTTTTAGCAGCTGGTGCTGATTGTAATTTGGTGGATGCCAATGGTCACCGTCCAATTGATGTTATTAA TGTTCCGCCAAAGCTCCAAGATGCTAGATTGATTCTAGAAGAGTTCCTTGCTGCTGATGGTTCTCTTGTTGAGCACGAGCACAATCTTAGGGTTTCCATA GCTACCATGAATTCAAATTCTCCACCTCTTTCACCTTCCCGGGAAAATGGGTCTCCACTATCAGGTTCAGATTCCCCAATGAAGTCAAAGCTATATGAAG CACCTGTTTCTTTTGTATCAGAGAGGAAAGAATATCCTGTTGATCCATCTCTCCCAGATATCAAGAATAGCATCTATTCAACTGATGAATTCCGAATGTA TTCATTCAAGGTAAGGCCTTGTTCCCGGGCCTATTCCCATGACTGGACCGAGTGTCCATTTGTTCACCCAGGGGAAAATGCTCGAAGAAGGGATCCTAGG AAGTTTCATTATAGTTGTGTCCCGTGCCCTGATTTTCGAAAAGGGGCTTGTAGACGTGGAGATATGTGTGAATATGCTCATGGGGTTTTTGAGTGCTGGC TGCACCCTGCTCAATACAGAACCCGGCTGTGCAAAGATGGCACAAATTGTGCGAGGAGAGTTTGCTTTTTTGCCCACACTGTTGAGGAGCTCCGCCCATT ATATGTATCCACTGGTTCTGCTGTTCCCTCTCCACGCTCAGGTACATCAGGTGCTGCTGCCATGGATTTTGCTTCTGCCATGAACCTCTTGCCAGGATCC CCTTCAGCTGCATCCATTATGTCTCCATCATCATTCACTCCACCCATGTCTCCTTCTGGCAACGGCATGTCGCATTCTTCGTTGGCCTGGCCCCAACCAA ATGTCCCAGCCTTGCTTCTCCCTGGAAGCAATATGCAGTCTAGTCGCTTGAGATCTTCTTTTAATGCGAGAGACATTCCAGCAGATTACAGCTTCCTTCC AGAATTCGATGTGCAGCAACAGCAGCTCCTAAGTGAGTTATCCAGTCTCACCCAACCATCTTTGAGCAATAACTCGTTGAATCGCTCTGGTCGATTGAAA GCCTTAACTCCTTCAAATCTTGATGATTATTTTTCTGCTGAGAGCTCTTCTCCTCGGCATGCTGATCAGGCTTTGGCTTCAGCTGTTTTCTCCCCAACGC ACAACTCTGCATTTCTGAATCAGTTCCAGCAGCAGCAAAGCATGTTATCACCTATCAATACAAATTTCTCTCCTAAGAATGGCGATCATCCTCTATTGCA GGCTTCATTTGCATCAGGCAGGATGTCTCCCCGGAGTGTGGAATCTATTTCGCCAATGAGCTCTCGAGCGTCTATGTTAGCTCAACGAGAGAAGCAGCTA CAGCAGTTGCGTAGCCTCAGCTCTAGGGAGCTAGGCTCCAATGCTGCTGCTATTGTTGGCTCCCCAGTTAACACTTGGTCAAAATGGGGTTCCTCAAATG GGAAACCAGACTGGACTGTTAGTACGGATGAGCTGGGAAAGCTCCGGAGATCAAATTCTTTTGAGCTTGGTAATGGAGACGAGCCTGATCTATCATGGGT TCAATCACTTGTTAAGGAATCTCCAACTGAGATGAAAGAAAAGTTATCAATGCCTGTTTCTGGAAGTGTTGCAGCAAGTGCGTCATCAAGCGAGAGTTCA AATGTGAACTCCCAAATTGAACCTATTGACCTTGACCATGTAGTAGGGTCATGGGTTGAGCTATTGCAGATTGATCAGCTTGTGGCTCAGCAAAACTAA
AA sequence Show only first row Show all	>Potri.016G053700.3 pacid=42808968 polypeptide=Potri.016G053700.3.p locus=Potri.016G053700 ID=Potri.016G053700.3.v4.1 annot-version=v4.1 MCCRLERLKLAATPTPPTIYFDKSRPSNIDMNHLTIKTEDAFASLLELAANNDVEGFKKSIECDPSCADEIGLWYGRQKGSKQMVNDLRTPLMVAATYGS IDVIKVILSLSDVDVSRSCGADKSTALHCAASGGAVNAVDVVKLLLAAGADCNLVDANGHRPIDVINVPPKLQDARLILEEFLAADGSLVEHEHNLRVSI ATMNSNSPPLSPSRENGSPLSGSDSPMKSKLYEAPVSFVSERKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPR KFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCARRVCFFAHTVEELRPLYVSTGSAVPSPRSGTSGAAAMDFASAMNLLPGS PSAASIMSPSSFTPPMSPSGNGMSHSSLAWPQPNVPALLLPGSNMQSSRLRSSFNARDIPADYSFLPEFDVQQQQLLSELSSLTQPSLSNNSLNRSGRLK ALTPSNLDDYFSAESSSPRHADQALASAVFSPTHNSAFLNQFQQQQSMLSPINTNFSPKNGDHPLLQASFASGRMSPRSVESISPMSSRASMLAQREKQL QQLRSLSSRELGSNAAAIVGSPVNTWSKWGSSNGKPDWTVSTDELGKLRRSNSFELGNGDEPDLSWVQSLVKESPTEMKEKLSMPVSGSVAASASSSESS NVNSQIEPIDLDHVVGSWVELLQIDQLVAQQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.016G053700 [exp]	0	1
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.006G239900 [exp]	5.00	0.7349
AT1G34320			Protein of unknown function (D...		Potri.001G305800 [exp]	14.14	0.7497
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.002G195066 [exp]	17.14	0.7436
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Potri.011G136300 [exp]	26.22	0.7377
					Potri.018G096021 [exp]	26.66	0.7402
AT1G07175			unknown protein		Potri.009G072201 [exp]	26.72	0.6494
					Potri.013G107650 [exp]	36.16	0.7120
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.019G131300 [exp]	36.60	0.7141
AT1G26580			unknown protein		Potri.010G159700 [exp]	51.82	0.7062
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.005G135500 [exp]	54.49	0.6777

Compare expression of checked genes

Potri.016G053700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.