Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41890 768 / 0 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) AT1G34300 353 / 8e-110 lectin protein kinase family protein (.1) AT2G19130 275 / 1e-80 S-locus lectin protein kinase family protein (.1) AT4G00340 244 / 1e-69 RLK4 receptor-like protein kinase 4 (.1) AT5G60900 213 / 1e-58 RLK1 receptor-like protein kinase 1 (.1) AT5G24080 200 / 3e-56 Protein kinase superfamily protein (.1) AT4G32300 202 / 8e-55 SD2-5 S-domain-2 5 (.1) AT4G21380 192 / 5e-51 ARK3 receptor kinase 3 (.1) AT1G65800 191 / 6e-51 ARK2 receptor kinase 2 (.1) AT4G11900 189 / 3e-50 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G053700 [exp] 1325 / 0 AT2G41890 765 / 0.0 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) Potri.001G006100 [exp] 488 / 2e-161 AT2G41890 389 / 1e-123 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) Potri.013G115800 [exp] 369 / 7e-116 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.013G115700 [exp] 364 / 7e-114 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 356 / 7e-111 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 350 / 2e-108 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 348 / 6e-108 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.015G026300 [exp] 309 / 7e-93 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.003G211800 [exp] 274 / 2e-80 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006052 [exp] 366 / 2e-114 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 297 / 3e-88 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10024195 [exp] 273 / 4e-80 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10024343 [exp] 261 / 1e-74 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10031231 [exp] 258 / 2e-74 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10029802 [exp] 252 / 2e-72 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024348 [exp] 247 / 4e-70 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10031805 [exp] 240 / 6e-68 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10042266 [exp] 238 / 1e-67 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10004283 [exp] 238 / 2e-67 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0168 [poplar] [flax] PAN PF00024 [poplar] [flax] PAN_1 PAN domain CL0168 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0168 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.016G053800.1 pacid=42809887 polypeptide=Potri.016G053800.1.p locus=Potri.016G053800 ID=Potri.016G053800.1.v4.1 annot-version=v4.1 ATGCTTAAGCAGGGCAATTTCTTGTTCAGTTCACCTTTCCTTCTATGTGTCTTCCTTTGGTTCTTTCTCATTCATATTGTTGTTTCACATATTCCCTTGG GGTCAAAGCTTTCTGTAGAGGAAAATAACTTGTGGGTTTCCTCCAATGGTGATTTTGCTGTTGGATTTGTTAACCATTCTGAACAGCCTAGTCAGTGTAG TGTAGGGATACGTTTCAATTCAAAATCTATTCCTTTCCCCAAGCAAACTGTGGTTTGGGTTGCTGGAGCTGATGTCACTGTGGGTAACAAGTCCTTTTTC CAGCTTTCTCAAAACGGGGAGCTGGTATTGGTTGATTCTTTGAGGGAAGTTACTGTGTGGACCAGCAACACGAGCCAATTAGCTGTTGCTTCGGCTCTTC TTCGTAATGATGGCAATCTTGTTCTATTGAATAGAAAGAAGGATGTTGTTTGGCAAAGTTTTGATAATCCATCCGACACACTTCTTCCAGGCCAGAATTT ACCTGTTCATAAAACCCTTAGAGCAGCAAGCAGAAATTCTGTTTCAAGTTATTACAGTCTTCATATGAATGCTTCAGGTCAGTTACAGCTGAAGTGGGAA AGCGATGTTATTTACTGGTCCAGAGGAAATCCTTCTAGTTTGAATCTTGGCGTCGTCCTTACCTCCGGTGGAGTCCTGCAACTTGTGGACCACAATCTGA ATCCTGTTTGGTCTGTTTTTGGGGAAGACCACAATGACAGTGTAAATTTTCGGTTACTTAAATTAGACATTGATGGTAATCTGCGGATATACTCATGGGT AGAAGCTACAGGGTCATGGAGATCAGTTTGGCAAGCCGTTGAAAATCAATGCAATGTTTTTGCAACCTGTGGCGGGCATGGCATCTGTGTTTTCAATACA TCAGGATCTCCCGAATGCCGATGCCCTTTCAAGACAACATCTTCATCCAACTTGAAATGTTTTGCACTGAATTGTGATTCTAATCACAGTATGGATACTT ATGAGCACACTTTTCTGTATGGGATTTATCCACCAAATGAATCTATCACCATTACTAGTTTACAGCAATGTAGAGAGTTGTGCATGCAGGACCCAGCTTG TACAGCTGCAACCTTCACAAATGATGGAACTGCTCAGTGCCGAATGACGACAAGTCCATACTTCTCTGGGCATCAAAACCCCTCTTTAAGTTCGATATCT TTTGTTAAGACATGCTCGGACCCCATAGCTGTTAATCCCCATAATTCAGGTTCTTCTCCATCACTATCTCCAGTCAAACGGTCTCATGGGTTGTGCCTTT CTTGTCAAATTGGTGGAGCAGCCTCAGGCACATTACTTTTATTTGTTGTTGTTCAGTTAGGGATTGGCTACTTCATCTATAGAAGAAGAAATCATATTTT GAGGAAAGCTGCTTTAGCTTACACAGGCCGTAACTCTAAGGGTGTGATGATGTTACCATTTACAGAAATCAAGGACATCACTGGGAATTTCAAGCACCAG ATAGGGCCAGGTATGTATAGAGGTGCCCTTTCAAACCAACAGCCAGTAGCAGTCAAAGACCTTGACGAAACCATTGAAGAAAGGAAGTTTCGAGCTGCTG TATCGAAGATAGGAAGTATACATCACAAAAACCTGGTGAAGCTGAATGGCTATTGCTGTGAGTTAGGCCATAGATATTTGGTCTACGAATATGTCAAAAA TGGTTCTCTGGACAAATGTATCGAAGATGATGAGTTGAATCAAAGACTGACTTGGAGAAGGAGAGTTGACATATGCTTAACTGTGGCGAAGGCTATTTGT TATTTGCACGCGGGATGTAGGGAGTTTATAAGCCATGGAAATTTGAAATGTTCAAACGTAGTCCTGGATAAAAATTACGAGGCCAAGGTGAGTGAATACG GGTTGGAAATGGTTCGTCCTGAGGAATCATACGGTGGAGAGAAAGATGTGGCGGATTTTGGCAAGATGGTGCTGATATTGATAACCGGGCGTCCAGAAGT CAAGGATCTTTGGGAGTGGACCTATGAGGAATGGATCCAGGGGCACCCAGAGAGGGTGATTGATAAAAGACTTGATGATGGCGTGGATTTAAAGGAGCTA GAGCGAGTGTTACGAATTGCTTTCTGGTGCCTTCAATCAGATGAACAGATGAGACCTTCAATGAGTGAGGTAGTGAAGGTATTGGAAGGGTCATTAACAG TTGATCCCCCACGACCTCCTTTCAGTCAAAGGTTATCAGAAGAAGAGTCCCTGGAGTCAGGCTCCAAACCTCAAAGTCCAATGGAACCATGA
AA sequence Show only first row Show all	>Potri.016G053800.1 pacid=42809887 polypeptide=Potri.016G053800.1.p locus=Potri.016G053800 ID=Potri.016G053800.1.v4.1 annot-version=v4.1 MLKQGNFLFSSPFLLCVFLWFFLIHIVVSHIPLGSKLSVEENNLWVSSNGDFAVGFVNHSEQPSQCSVGIRFNSKSIPFPKQTVVWVAGADVTVGNKSFF QLSQNGELVLVDSLREVTVWTSNTSQLAVASALLRNDGNLVLLNRKKDVVWQSFDNPSDTLLPGQNLPVHKTLRAASRNSVSSYYSLHMNASGQLQLKWE SDVIYWSRGNPSSLNLGVVLTSGGVLQLVDHNLNPVWSVFGEDHNDSVNFRLLKLDIDGNLRIYSWVEATGSWRSVWQAVENQCNVFATCGGHGICVFNT SGSPECRCPFKTTSSSNLKCFALNCDSNHSMDTYEHTFLYGIYPPNESITITSLQQCRELCMQDPACTAATFTNDGTAQCRMTTSPYFSGHQNPSLSSIS FVKTCSDPIAVNPHNSGSSPSLSPVKRSHGLCLSCQIGGAASGTLLLFVVVQLGIGYFIYRRRNHILRKAALAYTGRNSKGVMMLPFTEIKDITGNFKHQ IGPGMYRGALSNQQPVAVKDLDETIEERKFRAAVSKIGSIHHKNLVKLNGYCCELGHRYLVYEYVKNGSLDKCIEDDELNQRLTWRRRVDICLTVAKAIC YLHAGCREFISHGNLKCSNVVLDKNYEAKVSEYGLEMVRPEESYGGEKDVADFGKMVLILITGRPEVKDLWEWTYEEWIQGHPERVIDKRLDDGVDLKEL ERVLRIAFWCLQSDEQMRPSMSEVVKVLEGSLTVDPPRPPFSQRLSEEESLESGSKPQSPMEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41890			curculin-like (mannose-binding...		Potri.016G053800 [exp]	0	1
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.006G063900 [exp]	3.46	0.7246
AT3G04480			endoribonucleases (.1)		Potri.019G019600 [exp]	6.32	0.7046
AT5G49980		AFB5	auxin F-box protein 5 (.1)		Potri.005G159300 [exp]	19.28	0.6864
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Potri.003G018900 [exp]	25.51	0.6420
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Potri.010G073600 [exp]	29.84	0.6313
AT3G50530		CRK	CDPK-related kinase (.1.2)		Potri.005G135900 [exp]	29.91	0.6922	CRK.3
AT1G19880			Regulator of chromosome conden...		Potri.002G026600 [exp]	30.26	0.6926
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Potri.005G065800 [exp]	30.98	0.6692
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.011G091900 [exp]	31.49	0.6758	ARF6.4
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Potri.007G102800 [exp]	39.87	0.6331	CHR932

Compare expression of checked genes

Potri.016G053800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.