Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AGK2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57550 492 / 1e-174 GK-2, AGK2 GUANYLATE KINAS 2, guanylate kinase (.1.2) AT2G41880 461 / 3e-162 AGK1, GK-1 guanylate kinase 1 (.1) AT3G06200 71 / 2e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G01660 46 / 3e-05 unknown protein AT1G74150 44 / 0.0001 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G053400 [exp] 671 / 0 AT3G57550 519 / 0.0 GUANYLATE KINAS 2, guanylate kinase (.1.2) Potri.010G029400 [exp] 66 / 7e-12 AT3G06200 331 / 2e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G200600 [exp] 64 / 3e-11 AT3G06200 337 / 8e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G059400 [exp] 44 / 0.0001 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 43 / 0.0003 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011328 [exp] 525 / 0 AT3G57550 518 / 0.0 GUANYLATE KINAS 2, guanylate kinase (.1.2) Lus10041236 [exp] 73 / 4e-14 AT3G06200 341 / 2e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021947 [exp] 73 / 4e-14 AT3G06200 342 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00625 [poplar] [flax] Guanylate_kin Guanylate kinase
Representative CDS sequence Show only first row Show all	>Potri.016G054200.1 pacid=42809240 polypeptide=Potri.016G054200.1.p locus=Potri.016G054200 ID=Potri.016G054200.1.v4.1 annot-version=v4.1 ATGGGAGAAGCTCCAGCTTTCATTGTGGATGATCTGCAGAATCAGATTGGATTTGAAAATGGATTTGGCTCAAAATTCAAAGGCTGCAAAACCACCACAA CTATCGGCGATAAAACTTATGTCATTGGTGGCAACGATGAGTCAACATTGCCTGTTGAAGTTCGAATTTTTGACAAAGCTACTGGCAATTGGGTAACTCC TATCGTGCTGGGATCAAAACCTAACTCATGTAAAGGTCTCTCGGCCATATCATTGAATGATGATCGTATTTTGATAGTTAATAAGGGGTCCGCCCCTGAT GACTGCATTTTGTTTCTTGAGGTGGACACTTGGTTTGTCAGGGAGCAGAAAAAAATTCGGGGGACTGAGGTTGTTGCCTGGAGTAAGGGGGTATGGGGCG ATGCTGAGAAGCCAGTTGTCATAAGTGGTCCTTCTGGAGTGGGTAAAGGAACATTAATATCCATGCTTATGAAGGAATTCCCATCTATGTTTGGGTTTTC TGTTAGCCACACAACCCGTGCACCAAGAGGCATGGAGAAGGATGGGGTTCATTACCATTTCACCGAGCAAAGTATTATGGAGAAAGAGATAAAAGATGGG AAATTCGTTGAGTATGCTTCTGTTCATGGAAATCTGTATGGGACCAGTATTGAAGCTGTTGAGGTGGTAACTGATGCGGGGAAGAGGTGCATTCTTGACA TCGATGTTCAAGGAGCAAGATCAGTGAGGGCTAGTTCTCTGGAAGCAATCCTCATCTTTATTTGTCCCCCCTCAATGGAGGAGCTTGAGACTCGCCTCCG CTCAAGACGTACTGAGACAGAGGAGCAGATCCTTAAGCGACTCCAAAATGCAGAGGTGGAGATGGAGCAAGGAAAATCATCGGGCATCTTTGATCATATC TTGTATAACGATAATCTGGATGACTGTTATGAGAGTCTTAAGAAACTTCTTGGGATAGATGGAGCTGCAGCAGCTACCCAGATATCAGCACCCCAAGGGA TTGATCTGCCCGCAGACCGTTCAGTTTCGAAAATGGATAACAAGATTATCATAAACTATGGAACTCCAGAACTAGAGAAAGCATCAAAGAGCTTGATAGT ACTGGATGTATCCTCACTCAAGGGAGGGGCTCCTGGACGAACAAGAGGGCTTGACGTGTATGCCACTGACTCATTTTCAGATGACTTGAATGGGATCAAT CAACCAAGCTAA
AA sequence Show only first row Show all	>Potri.016G054200.1 pacid=42809240 polypeptide=Potri.016G054200.1.p locus=Potri.016G054200 ID=Potri.016G054200.1.v4.1 annot-version=v4.1 MGEAPAFIVDDLQNQIGFENGFGSKFKGCKTTTTIGDKTYVIGGNDESTLPVEVRIFDKATGNWVTPIVLGSKPNSCKGLSAISLNDDRILIVNKGSAPD DCILFLEVDTWFVREQKKIRGTEVVAWSKGVWGDAEKPVVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRGMEKDGVHYHFTEQSIMEKEIKDG KFVEYASVHGNLYGTSIEAVEVVTDAGKRCILDIDVQGARSVRASSLEAILIFICPPSMEELETRLRSRRTETEEQILKRLQNAEVEMEQGKSSGIFDHI LYNDNLDDCYESLKKLLGIDGAAAATQISAPQGIDLPADRSVSKMDNKIIINYGTPELEKASKSLIVLDVSSLKGGAPGRTRGLDVYATDSFSDDLNGIN QPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57550		GK-2, AGK2	GUANYLATE KINAS 2, guanylate k...		Potri.016G054200 [exp]	0	1	Pt-AGK2.2
AT4G01400			unknown protein		Potri.002G179600 [exp]	3.60	0.9129
AT5G12260			unknown protein		Potri.001G272400 [exp]	10.53	0.8956
AT5G18520			Lung seven transmembrane recep...		Potri.016G081300 [exp]	12.56	0.9055
AT1G08700		PS1	Presenilin-1 (.1)		Potri.013G067700 [exp]	13.03	0.8587
AT5G44860			unknown protein		Potri.012G125800 [exp]	13.74	0.8513
AT5G64970			Mitochondrial substrate carrie...		Potri.007G093300 [exp]	19.36	0.8731
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	33.88	0.8769
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Potri.013G011100 [exp]	37.28	0.8651	SYP41.2
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087500 [exp]	46.38	0.8660	LAC110c
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Potri.014G089400 [exp]	47.03	0.8513

Compare expression of checked genes

Potri.016G054200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.