Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41870 207 / 7e-66 Remorin family protein (.1) AT3G57540 196 / 3e-61 Remorin family protein (.1) AT1G67590 57 / 5e-09 Remorin family protein (.1.2) AT4G00670 50 / 1e-07 Remorin family protein (.1) AT1G30320 52 / 2e-07 Remorin family protein (.1) AT3G48940 50 / 3e-07 Remorin family protein (.1) AT2G02170 50 / 1e-06 Remorin family protein (.1.2) AT5G23750 46 / 6e-06 Remorin family protein (.1.2) AT3G61260 43 / 8e-05 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G053200 [exp] 348 / 2e-121 AT3G57540 196 / 2e-61 Remorin family protein (.1) Potri.014G058900 [exp] 61 / 2e-10 AT2G41870 64 / 2e-11 Remorin family protein (.1) Potri.008G178300 [exp] 57 / 4e-09 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.010G056800 [exp] 56 / 6e-09 AT1G67590 253 / 8e-82 Remorin family protein (.1.2) Potri.002G157700 [exp] 48 / 2e-06 AT3G61260 167 / 2e-52 Remorin family protein (.1) Potri.014G081300 [exp] 46 / 9e-06 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.001G358600 [exp] 46 / 1e-05 AT1G30320 448 / 2e-153 Remorin family protein (.1) Potri.008G144300 [exp] 45 / 3e-05 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.010G098000 [exp] 45 / 3e-05 AT2G02170 434 / 2e-148 Remorin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026302 [exp] 196 / 1e-62 AT3G57540 209 / 1e-67 Remorin family protein (.1) Lus10042367 [exp] 130 / 3e-37 AT3G57540 153 / 5e-46 Remorin family protein (.1) Lus10017811 [exp] 57 / 2e-09 AT3G61260 199 / 5e-65 Remorin family protein (.1) Lus10014785 [exp] 52 / 9e-08 AT3G61260 177 / 1e-56 Remorin family protein (.1) Lus10008014 [exp] 49 / 2e-07 AT5G23750 158 / 5e-50 Remorin family protein (.1.2) Lus10001477 [exp] 50 / 4e-07 AT5G23750 162 / 3e-50 Remorin family protein (.1.2) Lus10018840 [exp] 48 / 2e-06 AT3G61260 206 / 1e-67 Remorin family protein (.1) Lus10008477 [exp] 48 / 2e-06 AT5G23750 154 / 5e-47 Remorin family protein (.1.2) Lus10038522 [exp] 48 / 4e-06 AT1G30320 296 / 2e-98 Remorin family protein (.1) Lus10023284 [exp] 48 / 6e-06 AT1G30320 422 / 9e-144 Remorin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [poplar] [flax] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.016G054400.1 pacid=42810484 polypeptide=Potri.016G054400.1.p locus=Potri.016G054400 ID=Potri.016G054400.1.v4.1 annot-version=v4.1 ATGTTAAGTGCCCAAAGACCCTCCTCAAGCACCACAACCAATGAAGAAACCAATCAAGACCATGACAATGAACAAATCCGTGACATCCATGCTCTAACCC CACCTCATCCACCACCTCGAAACCGTTGGGAAACAGGCAGCAATCATCATGGATCATACTCTATGTCCATGAGTAGTGAAGGTGCTTCAGGTGAAAACTT TACTACCATGAGTAGAGAGTTTAATGCTCTTGTGATTGCAGGGTCTGCTATAGGAACTAGTAATACTACCAACAATAGCAGCTCTGATCGTAATGATCTT AATGATATTGGAAGCAACACCTTGCTGTCTAGGTTTGGAGAAGATGATGACGTGCCGGAAGAAACTAACCCTTTGGCTATTGTACCTGATAACCACCCTT TGGACCCCGAACCAAGCTCGAGAATGCTTGGGTCCGTTCGTGTGGATGGCAGCGACCATGGTGGAGCCGGTGGTGAAGTGTCTGTGCTAAGAGTGAAGAA AGAGGAGGTTGAGACTAAGATCACTGCATGGCAGAATGCAAAGATTGCAAAGATCAATAATAGGTTCAAGAGAGAAGATGCTATAATTAATGGATGGGAG AGTGAGCAAGTACAGAAGTCAACTTCTTGGATGAAGAAAGTAGAGAGGAAATTAGAGGAGAAAAGAGCAAGAGCCTCAGAGAAGATGCAGAATGAGATGG CGAAGGCACACAGAAAGGCAGAGGAGAGAAGAGCATCAGCTGAAGCTAAGAGAGGGACTAAAGTTGCTAGAGTTCTTGAGGTAGCCAATTTGATGAGAGC TATTGGGAGACCTCCTACCAAACGGTCCTTCTTTTGA
AA sequence Show only first row Show all	>Potri.016G054400.1 pacid=42810484 polypeptide=Potri.016G054400.1.p locus=Potri.016G054400 ID=Potri.016G054400.1.v4.1 annot-version=v4.1 MLSAQRPSSSTTTNEETNQDHDNEQIRDIHALTPPHPPPRNRWETGSNHHGSYSMSMSSEGASGENFTTMSREFNALVIAGSAIGTSNTTNNSSSDRNDL NDIGSNTLLSRFGEDDDVPEETNPLAIVPDNHPLDPEPSSRMLGSVRVDGSDHGGAGGEVSVLRVKKEEVETKITAWQNAKIAKINNRFKREDAIINGWE SEQVQKSTSWMKKVERKLEEKRARASEKMQNEMAKAHRKAEERRASAEAKRGTKVARVLEVANLMRAIGRPPTKRSFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41870			Remorin family protein (.1)		Potri.016G054400 [exp]	0	1
AT1G56600		ATGOLS2	galactinol synthase 2 (.1)		Potri.013G005800 [exp]	1.00	0.9093
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Potri.006G092400 [exp]	1.41	0.8623
AT5G22460			alpha/beta-Hydrolases superfam...		Potri.004G203700 [exp]	6.32	0.8348
AT1G35910		TPPD	trehalose-6-phosphate phosphat...		Potri.012G001000 [exp]	15.39	0.8494
AT5G67265			unknown protein		Potri.002G122800 [exp]	18.16	0.8114
AT2G38870			Serine protease inhibitor, pot...		Potri.006G212200 [exp]	18.33	0.8415
AT5G43580		UPI	UNUSUAL SERINE PROTEASE INHIBI...		Potri.010G075501 [exp]	18.65	0.8334
AT1G22990		HIPP22	heavy metal associated isopren...		Potri.010G114600 [exp]	19.36	0.7966
AT4G02250			Plant invertase/pectin methyle...		Potri.001G127500 [exp]	20.34	0.7614
AT1G05450			Bifunctional inhibitor/lipid-t...		Potri.010G085200 [exp]	22.13	0.8314

Compare expression of checked genes

Potri.016G054400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.