Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PG.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41850 420 / 1e-144 ADPG2, PGAZAT ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) AT3G57510 414 / 2e-142 ADPG1 Pectin lyase-like superfamily protein (.1) AT3G07970 412 / 2e-141 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT1G80170 353 / 2e-118 Pectin lyase-like superfamily protein (.1) AT1G70500 333 / 5e-110 Pectin lyase-like superfamily protein (.1) AT1G23460 315 / 2e-103 Pectin lyase-like superfamily protein (.1) AT2G43890 284 / 6e-92 Pectin lyase-like superfamily protein (.1) AT1G56710 280 / 6e-90 Pectin lyase-like superfamily protein (.1) AT2G43880 275 / 1e-88 Pectin lyase-like superfamily protein (.1) AT1G05650 273 / 9e-88 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G052700 [exp] 681 / 0 AT3G07970 449 / 7e-156 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.009G060400 [exp] 486 / 3e-170 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 360 / 5e-121 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 340 / 7e-113 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 337 / 8e-112 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 335 / 1e-110 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.013G005000 [exp] 296 / 2e-95 AT1G02460 561 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 296 / 2e-95 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006400 [exp] 284 / 6e-92 AT1G05660 472 / 1e-166 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026299 [exp] 504 / 7e-179 AT3G07970 418 / 3e-145 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10042371 [exp] 505 / 1e-177 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10029511 [exp] 448 / 5e-155 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 412 / 5e-141 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10036084 [exp] 316 / 1e-103 AT1G80170 491 / 2e-172 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 307 / 2e-99 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029139 [exp] 286 / 1e-92 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10008343 [exp] 275 / 4e-88 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10005304 [exp] 269 / 1e-85 AT1G05660 420 / 1e-145 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 268 / 1e-85 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.016G054800.1 pacid=42810584 polypeptide=Potri.016G054800.1.p locus=Potri.016G054800 ID=Potri.016G054800.1.v4.1 annot-version=v4.1 ATGGCCTTACAAAGGGCACTTCTTTACTCATTCTTCATAATCTCCATCTCCATTATTTCTTCCTATAGTTGTTCGCAAGAGGACCCACTTAATAATTACC TTGAAGAACAAGCATCTGGCTATGATTCTCAAGCTTATCCTTCGTATATTGAAGATGGTGGGTTTAAGGACTTAATTAAGCTACGAAGTGATGTTTTAGT TTTGCAGACGTTTAGCAAAGAGGGTAGCAAATCAACTCCAGTTATAACAGTTGGTGTAAGGGACTTTGGAGTTAAAGATGATGGAGGAGATGATACAGAT GACACAGAGACATTTGAAAGGGCTTGGAAGGAAGCTTGTTCTTCCCCTGAAGGTGCTATTATTGTTGTGCCCGAGTACACTTATCGTCTTAAGCCGATTA GATTCCAGGGTCCTTGCAAATCTAATATTGCATTGCAGGTACATGGAACCATTGAAGCATCTTGTAATCAATCGGACTACAAAAAGGATAGTAGACATTG GCTACTCTTTGATAGTGTTGACAATTTACTAGTTGAAGGTGGTGGAACTATCGATGGAAATGGGAAGATATGGTGGGAAAACTCGTGCAAAGTCAATAAA TCTCTTCCTTGCAAAGAGGCACCTACGGCTGTCACCTTCTTTGAATGCCAGAATTTGATTGTGAAGGACCTCAAAATCCAAAATGCACAACAAATGCATG TTACTTTCAAGAAAAGCAATCATGTTCTAGTATCCAACCTCACAGTAATTTCACCAGAAGAGAGCCCTAACACCGACGGCATCCATATCACAAAGACTCA AAACATCCAGATTACTGATTCAGTCATTGGAACAGGTGATGATTGTATATCCATTGTAAGTGGATCACATAATGTGCAGGCTACGGGCATAACTTGTGGA CCAGGTCATGGAATCAGTATTGGAAGCTTAGGAGCACATGATTCAAAAGACCATGTTTCAGGAGTTACTGTCAAGGGTGCCAAGCTTTCTGGCACCGCAA ATGGTGTTAGGATCAAAACATGGCAGGGAGGGTCTGGGAATGTAAGCAACATCAAGTTTCAGAATATTGAAATGAACAAGGTCACCAACCCCATTATAAT AGATCAAAACTATTGTGACCAGGATAAACCATGCAAACAACAGAAGTCAGCTCTTCAAGTGAAAAATGTGATGTACAAGAACATAAAGGGGACTAGCGCT TCTGAAGTGGCTATGAGATTTGATTGCAGCAAGGCTTATCCATGTCAAGGGATTCTATTACAAGATATTAATCTTGAAAGAGCAGGAGATAGAACGGCCA AAGCTTTGTGCAACAATGTTAAATTAGCTACGTTGGGAGTTGTTTATCCAAAATGTTCTTGA
AA sequence Show only first row Show all	>Potri.016G054800.1 pacid=42810584 polypeptide=Potri.016G054800.1.p locus=Potri.016G054800 ID=Potri.016G054800.1.v4.1 annot-version=v4.1 MALQRALLYSFFIISISIISSYSCSQEDPLNNYLEEQASGYDSQAYPSYIEDGGFKDLIKLRSDVLVLQTFSKEGSKSTPVITVGVRDFGVKDDGGDDTD DTETFERAWKEACSSPEGAIIVVPEYTYRLKPIRFQGPCKSNIALQVHGTIEASCNQSDYKKDSRHWLLFDSVDNLLVEGGGTIDGNGKIWWENSCKVNK SLPCKEAPTAVTFFECQNLIVKDLKIQNAQQMHVTFKKSNHVLVSNLTVISPEESPNTDGIHITKTQNIQITDSVIGTGDDCISIVSGSHNVQATGITCG PGHGISIGSLGAHDSKDHVSGVTVKGAKLSGTANGVRIKTWQGGSGNVSNIKFQNIEMNKVTNPIIIDQNYCDQDKPCKQQKSALQVKNVMYKNIKGTSA SEVAMRFDCSKAYPCQGILLQDINLERAGDRTAKALCNNVKLATLGVVYPKCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41850		ADPG2, PGAZAT	ARABIDOPSIS DEHISCENCE ZONE PO...		Potri.016G054800 [exp]	0	1	PG.2
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G038100 [exp]	1.00	0.9173
AT1G23210		ATGH9B6	glycosyl hydrolase 9B6 (.1)		Potri.015G127900 [exp]	3.74	0.8783
AT1G35710			Protein kinase family protein ...		Potri.019G129100 [exp]	4.89	0.8573
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Potri.005G175700 [exp]	5.83	0.7574
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.004G017700 [exp]	6.00	0.8056
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.010G204600 [exp]	10.81	0.8305
AT2G44260			Plant protein of unknown funct...		Potri.001G232500 [exp]	11.53	0.8392
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182321 [exp]	16.49	0.7914
AT4G27290			S-locus lectin protein kinase ...		Potri.010G015400 [exp]	16.97	0.7726
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.014G006800 [exp]	18.02	0.7966

Compare expression of checked genes

Potri.016G054800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.